View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14148_low_3 (Length: 393)
Name: NF14148_low_3
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14148_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 10610093 - 10610478
Alignment:
| Q |
1 |
tattttgttgaggctagtataattacacgagtcacaatcaactatgaactgtaataggaaaacaaggttatgcaatgctacaaagatagtgcgaatgacg |
100 |
Q |
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| T |
10610093 |
tattttgttgaggctagtataattacacgagtcacaatcaactatgaactgtaataggaaaacaaggttatgcaatgctacaaagatagtgcgaatgacg |
10610192 |
T |
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| Q |
101 |
ttggtagtcattcacgagataccacaaaaattatagtggatgagtttgaattttaaagacaaaaaagcattaataatttgacnnnnnnnnnnnnnnnnnn |
200 |
Q |
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| T |
10610193 |
ttggtagtcattcacgagataccacaaaaatgatagtggatgagtttgaattttaaagacaaaaaagcattaataatttgacatatattatatataatta |
10610292 |
T |
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| Q |
201 |
nnnncgtgtttcaacgtcagatatgtcatactcaatgtgtatataatttaagaatggnnnnnnnnnnnnggacattgatgtatagaggttaattggttta |
300 |
Q |
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| T |
10610293 |
tatacgtgtttcaacgtcagatatgtcatactcaatgtgtatataatttaagaatggaaaaaagaaaaaggacattgatgtatagaggttaattggttta |
10610392 |
T |
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| Q |
301 |
ccttgaagatgtatataacaaatcaaaagtaaattaatgctagcttccatggatttcaaattaccctaaattacagtttgcctatg |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10610393 |
ccttgaagatgtatataacaaatcaaaagtaaattaatgctagcttccatggatttcaaattaccctaaattacagtttgcttatg |
10610478 |
T |
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