View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14148_low_4 (Length: 392)
Name: NF14148_low_4
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14148_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 8024183 - 8024556
Alignment:
| Q |
1 |
tacctcaaaatagagctcagctactcctgttgtatctgctataagaccacccttaagcatggaccaacaattagactcagcaaaaatagcaccaccaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8024183 |
tacctcaaaatagagctcagctactcctgttgtatctgctataagaccacccttaagcatggaccaacaattaggctcagcaaaaatagcaccaccaaat |
8024282 |
T |
|
| Q |
101 |
ttaaatcctttggttgttttgactactgctgtgacaggaacattttcctcactcacttgtatccaagctgcataattttaaaccatagtacaattgatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8024283 |
ttaaatcctttggttgttttgactactgctgtgacaggaacagtttcctcactcacttgtatccaagctgcataattttaaaccatagtacaattgatca |
8024382 |
T |
|
| Q |
201 |
tagtcacataatttaagattcatgtatttgatataaacaacaaatttaaagcattaatcctagaatcaatcaaaagtcacctcacatttttaaatagtgt |
300 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8024383 |
tagtcacataatttaagattgatgtatttgatataaacaacaaatttaaagcattaatcctgtaatcaatcaaaagtcacctcacatttttaaatagtgt |
8024482 |
T |
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| Q |
301 |
catgtgattc-tttattttttgacaaaagtgtcatgtgatccttaaataactcatattaaacacttcaatataaat |
375 |
Q |
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| T |
8024483 |
catgtgattctttttttttttgacaaaagtgtcatgtgattcttaaataactc--attaatcactccaatataaat |
8024556 |
T |
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Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 21544595 - 21544788
Alignment:
| Q |
1 |
tacctcaaaatagagctcagctactcctgttgtatctgctataagaccacccttaagcatggaccaacaattagactcagcaaaaatagcaccaccaaat |
100 |
Q |
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||||||||||||||||||||||||| |||||| || ||| | ||||||||||||||||| ||||||||||| | ||||||| |||| |||||||||||| |
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| T |
21544595 |
tacctcaaaatagagctcagctacttctgttgcgtccgctgtgagaccacccttaagcatagaccaacaattcggctcagcataaatggcaccaccaaat |
21544694 |
T |
|
| Q |
101 |
ttaaatcctttggttgttttgactactgctgtgacaggaacattttcctcactcacttgtatccaagctgcataattttaaaccatagtacaat |
194 |
Q |
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|||||||||| ||||||||||| | |||||| || | ||||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
21544695 |
ttaaatccttcagttgttttgaccattgctgttaccaggacattcgcctcactcacttgtatccaagctgcataattttaacccatagttcaat |
21544788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 28152482 - 28152306
Alignment:
| Q |
1 |
tacctcaaaatagagctcagctactcctgttgtatctgctataagaccacccttaagcatggaccaacaattagactcagcaaaaatagcaccaccaaat |
100 |
Q |
| |
|
||||||||| |||||||||||| | |||| |||||||||||| | ||||||||||||||| |||||||| ||||| || |||||||| |||||| |||| |
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| T |
28152482 |
tacctcaaagtagagctcagcttcccctgatgtatctgctatgaaaccacccttaagcatagaccaacagttagattccgcaaaaatgacaccacaaaat |
28152383 |
T |
|
| Q |
101 |
ttaaatcctttggttgttttgactactgctgtgacaggaacattttcctcactcacttgtatccaagctgcataatt |
177 |
Q |
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|||||||||| ||||||| ||||||||||| |||||||||||| | | ||||||||||| |||||||||| |||| |
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| T |
28152382 |
ttaaatccttcatttgttttaactactgctgttacaggaacatttccattactcacttgtaaccaagctgcacaatt |
28152306 |
T |
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