View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14148_low_5 (Length: 380)
Name: NF14148_low_5
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14148_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 40403948 - 40404164
Alignment:
| Q |
20 |
acccccaccctcatttatatcatcattttcttcttctccttattcatcaatatcatcttctagtttctttttataagcggttttcttcatctagtttgtt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40403948 |
acccccaccctcatttatatcatcattttcttcttctccttattcatcaatatcatcttctagtttctttttataagcggttttcttcatctagtttgtt |
40404047 |
T |
|
| Q |
120 |
atgcttgttggatcatatacctaaaatttaacgttagcttttgttgtccaaatattcttctaagagtaaaaatttatttagttatagagcatgttaattg |
219 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40404048 |
atgcttgttggatcatatacatcaaatttaacgttagcttttgttgtccaaatattcttcttagagtaaaaatttatttagttatagagcatgttaattg |
40404147 |
T |
|
| Q |
220 |
gaaacatattaacatat |
236 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
40404148 |
gaaacatattaacatat |
40404164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 234 - 371
Target Start/End: Original strand, 40404215 - 40404352
Alignment:
| Q |
234 |
tatatattgcatggcgatatgtcatatttttattttcaacacaaatgctatagtaaacaataataaaagtagtcatttgttaacaagtggtgatggatat |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40404215 |
tatatattgcatggcgatatgtcatatttttattttcaactcaaatgctatagtaaacaataataaaagtagtcatttgttaacaagtggtgatggatat |
40404314 |
T |
|
| Q |
334 |
ttcttgtttgtttttacaggcaacatcatttcctttgc |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40404315 |
ttcttgtttgtttttacaggcaacatcatttcctttgc |
40404352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University