View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14148_low_6 (Length: 356)
Name: NF14148_low_6
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14148_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 175 - 338
Target Start/End: Original strand, 45139082 - 45139245
Alignment:
| Q |
175 |
taacataaacaaaaagtatagtgacttttctccttgtgaatgtctgaagaacaaagtgtgaccttctagactttgcttgtaatccaatcatatcatgaca |
274 |
Q |
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| T |
45139082 |
taacataaacaagaagtatagtcacttttctccttatgaatgtctcaagaacaaagtgtgacctcctagactttgcttgtaatccaatcatatcatgaca |
45139181 |
T |
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| Q |
275 |
tttgttaattttagagtctttaacaataacacatgacacattcaataatcaaaatgatcattta |
338 |
Q |
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| T |
45139182 |
tttgttaattttagagtctttaacaataacacatgacacattcaataatcaaaatgatcattta |
45139245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 175
Target Start/End: Original strand, 45124623 - 45124785
Alignment:
| Q |
13 |
aatatgatatgttagtgccacttatgatactagttaagaaaactaatataaattttttgcattgaaaaatgttaaaaagggttaatattacgccataaaa |
112 |
Q |
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| T |
45124623 |
aatatgatatgttagtgtcacttaagacactagttaagaaaattaatataaattttttacattgagaagtgttaaaaagggttaatataacgccataaaa |
45124722 |
T |
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| Q |
113 |
tcagtttataagatgagaattgtctcacttataaacacgtgttcaatgctattattattcaat |
175 |
Q |
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| T |
45124723 |
tcaatttataaggtgagaattgtctcacttataaacacgtgttcaatgctattattattcaat |
45124785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 19910825 - 19910864
Alignment:
| Q |
118 |
ttataagatgagaattgtctcacttataaacacgtgttca |
157 |
Q |
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| T |
19910825 |
ttataagatgagaattgtctcactaataaacacatgttca |
19910864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 17563542 - 17563591
Alignment:
| Q |
42 |
ctagttaagaaaactaatataaattttttgcattgaaaaatgttaaaaag |
91 |
Q |
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| T |
17563542 |
ctagttaagaaaactaatttaaaaattttgcattaaaaattgttaaaaag |
17563591 |
T |
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