View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14148_low_7 (Length: 333)
Name: NF14148_low_7
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14148_low_7 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 103 - 311
Target Start/End: Original strand, 19535944 - 19536152
Alignment:
| Q |
103 |
caaggaataattaccatgttcaggagcttgtttgatatacaaaaggactctacaagcagctttaaaatgaacttaagtgggtttcgtttgatcataagtc |
202 |
Q |
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| T |
19535944 |
caaggaataattaccatgttcaggagcttgtttgatatacaaaaggactctacaagcaactttaagatgaacttaagtgggtttcgtttgatcataagtc |
19536043 |
T |
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| Q |
203 |
cggtatcgaccatattttcctccactcaaggctttaaacccatgccccatgacgtatctaggacaactttcctggttaatccttttgcaaaaggatctta |
302 |
Q |
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| T |
19536044 |
cggtatcgaccatattttcctccactcaaggctttaaacccatgccccatgacgtatctaggacaactttcctggttaatccttttgcaaaaggatctta |
19536143 |
T |
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| Q |
303 |
tcaatttca |
311 |
Q |
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||||||||| |
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| T |
19536144 |
tcaatttca |
19536152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 302
Target Start/End: Original strand, 18983133 - 18983231
Alignment:
| Q |
204 |
ggtatcgaccatattttcctccactcaaggctttaaacccatgccccatgacgtatctaggacaactttcctggttaatccttttgcaaaaggatctta |
302 |
Q |
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| T |
18983133 |
ggtatccaccatattttcctccactcaaggctttaaattcatcccccacaacatatccaggacaaatttcctaggtaatcctttcacataaggatctta |
18983231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 19535915 - 19535945
Alignment:
| Q |
18 |
atacacgccaataaatgagtgtttggtatca |
48 |
Q |
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| T |
19535915 |
atacacgccaataaatgagtgtttggtatca |
19535945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 206 - 302
Target Start/End: Original strand, 29735390 - 29735486
Alignment:
| Q |
206 |
tatcgaccatattttcctccactcaaggctttaaacccatgccccatgacgtatctaggacaactttcctggttaatccttttgcaaaaggatctta |
302 |
Q |
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| T |
29735390 |
tatccaccatattttcctccactcaaggctttaagctcatcccccttaacgtatccaggtcaactttccgtgttaatcctttcacaaaaggatctta |
29735486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 240
Target Start/End: Complemental strand, 16748630 - 16748575
Alignment:
| Q |
185 |
ttcgtttgatcataagtccggtatcgaccatattttcctccactcaaggctttaaa |
240 |
Q |
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| T |
16748630 |
ttcgtttgaccataaattaggtgtccaccatattttcctccactcaaggctttaaa |
16748575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 34247006 - 34246908
Alignment:
| Q |
204 |
ggtatcgaccatattttcctccactcaaggctttaaacccatgccccatgacgtatctaggacaactttcctggttaatccttttgcaaaaggatctta |
302 |
Q |
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| T |
34247006 |
ggtatccaccatattttcctccactcaaggttttatattcatccccctcgatgtatccaggacaacttacctgggtaatcctttcgcataaggatctta |
34246908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 287
Target Start/End: Original strand, 1091708 - 1091781
Alignment:
| Q |
214 |
atattttcctccactcaaggctttaaacccatgccccatgacgtatctaggacaactttcctggttaatccttt |
287 |
Q |
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| T |
1091708 |
atattttcccccactcaaggctttaaattcatccccctcgatgtatccaagacaactttcctggataatccttt |
1091781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 204 - 302
Target Start/End: Complemental strand, 2286 - 2188
Alignment:
| Q |
204 |
ggtatcgaccatattttcctccactcaaggctttaaacccatgccccatgacgtatctaggacaactttcctggttaatccttttgcaaaaggatctta |
302 |
Q |
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| T |
2286 |
ggtatccaccatattttcctccactcatggctttatattcatccccctcgatgtatccaggacaactttcctgagtaatcctttcacataaggatctta |
2188 |
T |
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