View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14148_low_9 (Length: 285)
Name: NF14148_low_9
Description: NF14148
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14148_low_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 20391160 - 20390892
Alignment:
| Q |
1 |
actttattaaaagatagaaaattttgcaaggacctttttaatgaataagacttacaagacaacatcttaagttacaaacattcatagtaaagacttggta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20391160 |
actttattaaaagatagaaaattttgcaaggacctttttaatgaataagacttacaagacaacatcttaagttacaaacattcatagtaaagacttggta |
20391061 |
T |
|
| Q |
101 |
tgagtatacacttgtaaaaggaacaatttcctaataaaccaaatgtaaaattatcctcacggtcctacaaattaatagcacactagcacaagatatgcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20391060 |
tgagtatacacttgtaaaaggaacaatttcctaataaaccaaatgtaaaattatcctcacggtcctacaaattaatagcacactagcacaagatatgcat |
20390961 |
T |
|
| Q |
201 |
agttgctaaagagagatataaactagagcatgatcaaatcatcaaatcctgcaacacttgatgcaactg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20390960 |
agttgctaaagagagatataaactagagcatgatcaaatcatcaaatcctgcaacacttgatgcaactg |
20390892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 74 - 241
Target Start/End: Complemental strand, 20400390 - 20400233
Alignment:
| Q |
74 |
acaaacattcatagtaaagacttggtatgagtatacacttgtaaaaggaacaatttcctaataaaccaaatgtaaaattatcctcacggtcctacaaatt |
173 |
Q |
| |
|
||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
20400390 |
acaaacattcaaagtatagacttggtatgagta--cacttgtaaaaggaacaatttcctaataaaccaaatgtcaaattatcctcacggtcctacaaatt |
20400293 |
T |
|
| Q |
174 |
aatagcacactagcacaagatatgcatagttgctaaagagagatataaactagagcatgatcaaatca |
241 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||| |
|
|
| T |
20400292 |
aatag--------cacaagatatgcatagttgctaaagagatatatatactggagcatgattaaatca |
20400233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 3281052 - 3281095
Alignment:
| Q |
171 |
attaatagcacactagcacaagatatgcatagttgctaaagaga |
214 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
3281052 |
attaatagcacactagcacatgatatgcatagtggctaaagaga |
3281095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 4816703 - 4816662
Alignment:
| Q |
1 |
actttattaaaagatagaaaattttgcaaggacctttttaat |
42 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4816703 |
acttttttaaaagatagaaaattttgcaaggaccttattaat |
4816662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University