View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14149_high_10 (Length: 304)

Name: NF14149_high_10
Description: NF14149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14149_high_10
NF14149_high_10
[»] chr5 (15 HSPs)
chr5 (30-304)||(1586748-1587022)
chr5 (6-304)||(1586838-1587133)
chr5 (6-304)||(1586751-1587049)
chr5 (6-301)||(1586865-1587157)
chr5 (15-192)||(1586988-1587162)
chr5 (116-304)||(1586747-1586938)
chr5 (58-301)||(1586950-1587184)
chr5 (58-140)||(1591032-1591114)
chr5 (175-252)||(1591034-1591111)
chr5 (30-279)||(1586949-1587189)
chr5 (81-167)||(1591032-1591121)
chr5 (24-108)||(1591034-1591121)
chr5 (6-78)||(1587090-1587162)
chr5 (195-281)||(1591032-1591121)
chr5 (6-54)||(1587117-1587165)
[»] chr3 (7 HSPs)
chr3 (81-304)||(19270699-19270916)
chr3 (58-293)||(19270683-19270909)
chr3 (110-301)||(19270648-19270833)
chr3 (30-292)||(19270630-19270880)
chr3 (21-192)||(19270697-19270862)
chr3 (15-151)||(19270630-19270760)
chr3 (15-169)||(19270639-19270787)


Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 304
Target Start/End: Original strand, 1586748 - 1587022
Alignment:
Q  30 ccaagaaacaatggaaatagatgttgttcaagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatg 129  Q
    ||||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586748 ccaagaaacaatggaaggagatgttgtccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatg 1586847  T
Q  130 gaaggagatgttatccaagaaacaatggaaggggatgttttcctggaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttc 229  Q
    |||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586848 gaaggagatgttatccaagaaacaatggaaggagatgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttc 1586947  T
Q  230 gccaggaaacaatggaaggagattttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggag 304  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1586948 gccaagaaacaatggaaggagatgttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggag 1587022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 304
Target Start/End: Original strand, 1586838 - 1587133
Alignment:
Q  6 agaagcaaaggaaggagatgttatccaagaaacaatggaaatagatgttgttcaagaaacaatagaaggagatcatgttcgccaagaaacaacggaagga 105  Q
    |||| ||| |||||||||||||||||||||||||||||||  ||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||    
T  1586838 agaaacaatggaaggagatgttatccaagaaacaatggaaggagatgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaagga 1586937  T
Q  106 gatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatggaaggggatgttttcctggaaacaatggaaggagatcatgttcaccaag 205  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||  ||||||||||||||||   |||||  |||||    
T  1586938 gatcatgttcgccaagaaacaatggaaggagatgttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggag---atgttgtccaag 1587034  T
Q  206 aaacaacggaaggagatcatgttcgccaggaaacaatggaaggagattttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggag 304  Q
    ||||||  ||||||||||||||||||||  ||||||||||| ||||| ||  |||||| ||||||||| |||||||| ||| |||||||||||||||||    
T  1587035 aaacaatagaaggagatcatgttcgccaaaaaacaatggaaagagatgtttaccaagaaacaatggaaagagatgttctcccagaaacaatggaaggag 1587133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 6 - 304
Target Start/End: Original strand, 1586751 - 1587049
Alignment:
Q  6 agaagcaaaggaaggagatgttatccaagaaacaatggaaatagatgttgtt---caagaaacaatagaaggagatcatgttcgccaagaaacaacggaa 102  Q
    |||| ||| ||||||||||||| |||||||||||||||||  ||||  ||||   ||||||||||  |||||||||||||||||||||||||||| ||||    
T  1586751 agaaacaatggaaggagatgttgtccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaa 1586850  T
Q  103 ggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatggaagggg---atgttttcctggaaacaatggaaggagatcatgttc 199  Q
    ||||   |||||  ||||||||||||||||||||||||| ||||||||||||||||||| |   |||||  ||  ||||||| |||||||||||||||||    
T  1586851 ggag---atgttatccaagaaacaatggaaggagatgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttc 1586947  T
Q  200 accaagaaacaacggaaggagatcatgttcgccaggaaacaatggaaggagattttatccaagacacaatggaaggagatgttgtccaagaaacaatgga 299  Q
     ||||||||||| ||||||||   |||||  ||| || ||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||| ||    
T  1586948 gccaagaaacaatggaaggag---atgttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggagatgttgtccaagaaacaataga 1587044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 6 - 301
Target Start/End: Original strand, 1586865 - 1587157
Alignment:
Q  6 agaagcaaaggaaggagatgttatccaagaaacaatggaaatagatgttgttca---agaaacaatagaaggagatcatgttcgccaagaaacaacggaa 102  Q
    |||| ||| ||||||||||||| |||||||||||||||||  ||||  ||||||   ||||||||  |||||||||||||||||||||||||||| ||||    
T  1586865 agaaacaatggaaggagatgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaa 1586964  T
Q  103 ggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatggaaggggatgttttcctggaaacaatggaaggagatcatgttcacc 202  Q
    ||||||   |||  |||||| |||||||||||||||||| ||||||||||||||||||| |||||| |||  |||||||| |||||||||||||||| ||    
T  1586965 ggagat---gttatccaagacacaatggaaggagatgttgtccaagaaacaatggaaggagatgttgtccaagaaacaatagaaggagatcatgttcgcc 1587061  T
Q  203 aagaaacaacggaaggagatcatgttcgccaggaaacaatggaaggagattttatccaagacacaatggaaggagatgttgtccaagaaacaatggaag 301  Q
    || |||||| |||| |||||   |||  ||| |||||||||||| ||||| || ||| ||| |||||||||||||||||||||||||||||||||||||    
T  1587062 aaaaaacaatggaaagagat---gtttaccaagaaacaatggaaagagatgttctcccagaaacaatggaaggagatgttgtccaagaaacaatggaag 1587157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 15 - 192
Target Start/End: Original strand, 1586988 - 1587162
Alignment:
Q  15 ggaaggagatgttatccaagaaacaatggaaatagatgttgttcaagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgtt 114  Q
    ||||||||||||| |||||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| |||||   |||    
T  1586988 ggaaggagatgttgtccaagaaacaatggaaggagatgttgtccaagaaacaatagaaggagatcatgttcgccaaaaaacaatggaaagagat---gtt 1587084  T
Q  115 cgccaagaaacaatggaaggagatgttatccaagaaacaatggaaggggatgttttcctggaaacaatggaaggagat 192  Q
      |||||||||||||||| |||||||| ||| ||||||||||||||| |||||| |||  ||||||||||||| ||||    
T  1587085 taccaagaaacaatggaaagagatgttctcccagaaacaatggaaggagatgttgtccaagaaacaatggaagaagat 1587162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 116 - 304
Target Start/End: Original strand, 1586747 - 1586938
Alignment:
Q  116 gccaagaaacaatggaaggagatgttatccaagaaacaatggaagggg---atgttttcctggaaacaatggaaggagatcatgttcaccaagaaacaac 212  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| |   |||||  ||  ||||||| ||||||||||||||||| |||||||||||     
T  1586747 gccaagaaacaatggaaggagatgttgtccaagaaacaatggaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaat 1586846  T
Q  213 ggaaggagatcatgttcgccaggaaacaatggaaggagattttatccaagacacaatggaaggag---atgttgtccaagaaacaatggaaggag 304  Q
    ||||||||   |||||  ||| |||||||||||||||||| || ||||||| |||||||||||||   |||||  ||||||||||| ||||||||    
T  1586847 ggaaggag---atgttatccaagaaacaatggaaggagatgttttccaagaaacaatggaaggagatcatgttcaccaagaaacaacggaaggag 1586938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 58 - 301
Target Start/End: Original strand, 1586950 - 1587184
Alignment:
Q  58 caagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatgg 157  Q
    ||||||||||| |||||||||   |||  |||||| |||| ||||||||||  |||   ||||||||||||||||||||||||| ||||||||||||| |    
T  1586950 caagaaacaatggaaggagat---gttatccaagacacaatggaaggagatgttgt---ccaagaaacaatggaaggagatgttgtccaagaaacaatag 1587043  T
Q  158 aaggggat---gttttcctggaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttcgccaggaaacaatggaaggagattt 254  Q
    |||| |||   |||  ||   ||||||||||| |||||   ||| |||||||||||| |||| |||||   |||| ||  |||||||||||||||||| |    
T  1587044 aaggagatcatgttcgccaaaaaacaatggaaagagat---gtttaccaagaaacaatggaaagagat---gttctcccagaaacaatggaaggagatgt 1587137  T
Q  255 tatccaagacacaatggaaggagatgttgtccaagaaacaatggaag 301  Q
    | ||||||| |||||||||| |||||||  |||||||| ||||||||    
T  1587138 tgtccaagaaacaatggaagaagatgtttgccaagaaataatggaag 1587184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 58 - 140
Target Start/End: Complemental strand, 1591114 - 1591032
Alignment:
Q  58 caagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagatgt 140  Q
    ||||||||||| ||| ||||||||||| |||||||||||| || | |||||||||||||||||||||||||||||||||||||    
T  1591114 caagaaacaatggaacgagatcatgtttgccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagatgt 1591032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 1591111 - 1591034
Alignment:
Q  175 gaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttcgccaggaaacaatggaaggagat 252  Q
    |||||||||||| |||||||||||  ||||||||||| || | |||||||||||||||| ||||||||||||||||||    
T  1591111 gaaacaatggaacgagatcatgtttgccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagat 1591034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 279
Target Start/End: Original strand, 1586949 - 1587189
Alignment:
Q  30 ccaagaaacaatggaaatagatgttgttcaagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatg 129  Q
    ||||||||||||||||  ||||||| | ||||| ||||| |||||||||  |||   ||||||||||| ||||||||||  |||   ||||||||||||     
T  1586949 ccaagaaacaatggaaggagatgttatccaagacacaatggaaggagatgttgt---ccaagaaacaatggaaggagatgttgt---ccaagaaacaata 1587042  T
Q  130 gaaggagat---gttatccaagaaacaatggaaggggatgttttcctggaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatg 226  Q
    |||||||||   |||  |||| ||||||||||| | ||||||| ||  |||||||||||| |||||   |||| || |||||||| ||||||||||  ||    
T  1587043 gaaggagatcatgttcgccaaaaaacaatggaaagagatgtttaccaagaaacaatggaaagagat---gttctcccagaaacaatggaaggagatgttg 1587139  T
Q  227 ttcgccaggaaacaatggaaggagattttatccaagacacaatggaaggagat 279  Q
    |   ||| ||||||||||||| |||| ||  |||||| | |||||||| ||||    
T  1587140 t---ccaagaaacaatggaagaagatgtttgccaagaaataatggaagaagat 1587189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 167
Target Start/End: Complemental strand, 1591121 - 1591032
Alignment:
Q  81 tgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggag---atgttatccaagaaacaatggaaggggatgt 167  Q
    ||||| ||||||||||| |||| ||||||||||| ||||||||||||||| | |||   |||||  |||||||||||||||||| |||||    
T  1591121 tgttctccaagaaacaatggaacgagatcatgtttgccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagatgt 1591032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 1591121 - 1591034
Alignment:
Q  24 tgttatccaagaaacaatggaaatagatgttgtt---caagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagat 108  Q
    |||| |||||||||||||||||  ||||  ||||   ||||||||||| | | |||||||||||||||||||||||| ||||||||||    
T  1591121 tgttctccaagaaacaatggaacgagatcatgtttgccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagat 1591034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 78
Target Start/End: Original strand, 1587090 - 1587162
Alignment:
Q  6 agaagcaaaggaaggagatgttatccaagaaacaatggaaatagatgttgttcaagaaacaatagaaggagat 78  Q
    |||| ||| |||| |||||||| ||| |||||||||||||  ||||||||| ||||||||||| |||| ||||    
T  1587090 agaaacaatggaaagagatgttctcccagaaacaatggaaggagatgttgtccaagaaacaatggaagaagat 1587162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 281
Target Start/End: Complemental strand, 1591121 - 1591032
Alignment:
Q  195 tgttcaccaagaaacaacggaaggagatcatgttcgccaggaaacaatggaaggag---attttatccaagacacaatggaaggagatgt 281  Q
    ||||| ||||||||||| |||| ||||||||||| |||| |||||||||| | |||   || ||  |||||| |||||||||||||||||    
T  1591121 tgttctccaagaaacaatggaacgagatcatgtttgccaagaaacaatggcacgagatcatgttcgccaagaaacaatggaaggagatgt 1591032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 1587117 - 1587165
Alignment:
Q  6 agaagcaaaggaaggagatgttatccaagaaacaatggaaatagatgtt 54  Q
    |||| ||| ||||||||||||| |||||||||||||||||  |||||||    
T  1587117 agaaacaatggaaggagatgttgtccaagaaacaatggaagaagatgtt 1587165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 81 - 304
Target Start/End: Complemental strand, 19270916 - 19270699
Alignment:
Q  81 tgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatggaaggggatgttttcctggaaaca 180  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||||||||  ||||||| |||||||||  |||||| | |||||| |||  ||||||    
T  19270916 tgttctccaagaaacaaaggaacgagatcatgttcgccaagaaacaatggaaaaagatgttgtccaagaaatgatggaaagagatgttctccaagaaaca 19270817  T
Q  181 atggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttcgccaggaaacaatggaaggagattttatccaagacacaatggaaggagatg 280  Q
    || |||| ||   |||||| |||| |||||| ||||||||   |||||  ||| ||||   ||||||||||| ||  |||||| ||||| |||| |||||    
T  19270816 atagaagaag---atgttctccaaaaaacaatggaaggag---atgttgtccaagaaaagttggaaggagatgttccccaagaaacaatagaagaagatg 19270723  T
Q  281 ttgtccaagaaacaatggaaggag 304  Q
    ||||||||||||||||||||||||    
T  19270722 ttgtccaagaaacaatggaaggag 19270699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 58 - 293
Target Start/End: Complemental strand, 19270909 - 19270683
Alignment:
Q  58 caagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatggaaggagatgttatccaagaaacaatgg 157  Q
    ||||||||||  ||| |||||||||||||||||||||||| ||||  ||   |||||  ||||||||  |||||| |||||||| ||||||||||||| |    
T  19270909 caagaaacaaaggaacgagatcatgttcgccaagaaacaatggaaaaag---atgttgtccaagaaatgatggaaagagatgttctccaagaaacaatag 19270813  T
Q  158 aaggggatgttttcctggaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttcgccaggaaacaatggaaggagattttat 257  Q
    |||  |||||| |||   |||||||||||||||   |||||  ||||||||    ||||||||   |||||| ||| |||||||| |||| |||| || |    
T  19270812 aagaagatgttctccaaaaaacaatggaaggag---atgttgtccaagaaaagttggaaggag---atgttccccaagaaacaatagaagaagatgttgt 19270719  T
Q  258 ccaagacacaatggaaggagatgttgtccaagaaac 293  Q
    |||||| |||||||||||||||||| ||||||||||    
T  19270718 ccaagaaacaatggaaggagatgttctccaagaaac 19270683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 110 - 301
Target Start/End: Complemental strand, 19270833 - 19270648
Alignment:
Q  110 atgttcgccaagaaacaatggaaggagatgttatccaagaaacaatggaaggggatgttttcctggaaacaatggaaggagatcatgttcaccaagaaac 209  Q
    |||||| |||||||||||| |||| ||||||| ||||| ||||||||||||| |||||| |||  ||||   |||||||||||   |||| |||||||||    
T  19270833 atgttctccaagaaacaatagaagaagatgttctccaaaaaacaatggaaggagatgttgtccaagaaaagttggaaggagat---gttccccaagaaac 19270737  T
Q  210 aacggaaggagatcatgttcgccaggaaacaatggaaggagattttatccaagacacaatggaaggagatgttgtccaagaaacaatggaag 301  Q
    ||  |||| ||||  |||   ||| |||||||||||||||||| || ||||||| || ||| ||| |||||||  |||||||||||||||||    
T  19270736 aatagaagaagatgttgt---ccaagaaacaatggaaggagatgttctccaagaaacgatgaaagaagatgtttgccaagaaacaatggaag 19270648  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 292
Target Start/End: Complemental strand, 19270880 - 19270630
Alignment:
Q  30 ccaagaaacaatggaaatagatgttgttcaagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaagaaacaatg 129  Q
    ||||||||||||||||| ||||||||| |||||||  || ||| |||   |||||| |||||||||||  |||| ||   |||||| |||| ||||||||    
T  19270880 ccaagaaacaatggaaaaagatgttgtccaagaaatgatggaaagag---atgttctccaagaaacaatagaagaag---atgttctccaaaaaacaatg 19270787  T
Q  130 gaaggagatgttatccaagaaacaatggaaggggatgttttcctggaaacaatggaaggagatcatgttcaccaagaaacaacggaaggagatcatgttc 229  Q
    |||||||||||| |||||||||   ||||||| ||||||  ||  |||||||| |||| ||   |||||  ||||||||||| ||||||||   ||||||    
T  19270786 gaaggagatgttgtccaagaaaagttggaaggagatgttccccaagaaacaatagaagaag---atgttgtccaagaaacaatggaaggag---atgttc 19270693  T
Q  230 gccaggaaacaatggaaggagattttatccaagacacaatggaaggagatgttgtccaagaaa 292  Q
     ||| ||||| ||| ||| |||| ||  |||||| |||||||||| |||||||  ||||||||    
T  19270692 tccaagaaacgatgaaagaagatgtttgccaagaaacaatggaagaagatgtttgccaagaaa 19270630  T

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Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 21 - 192
Target Start/End: Complemental strand, 19270862 - 19270697
Alignment:
Q  21 agatgttatccaagaaacaatggaaatagatgttgttcaagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgttcgccaa 120  Q
    ||||||| |||||||||  ||||||| ||||||| | |||||||||||||||| ||   |||||| |||| |||||| ||||||||   |||||  ||||    
T  19270862 agatgttgtccaagaaatgatggaaagagatgttctccaagaaacaatagaagaag---atgttctccaaaaaacaatggaaggag---atgttgtccaa 19270769  T
Q  121 gaaacaatggaaggagatgttatccaagaaacaatggaaggggatgttttcctggaaacaatggaaggagat 192  Q
    ||||   ||||||||||||||  |||||||||||| ||||  |||||| |||  ||||||||||||||||||    
T  19270768 gaaaagttggaaggagatgttccccaagaaacaatagaagaagatgttgtccaagaaacaatggaaggagat 19270697  T

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Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 15 - 151
Target Start/End: Complemental strand, 19270760 - 19270630
Alignment:
Q  15 ggaaggagatgttatccaagaaacaatggaaatagatgttgttcaagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgtt 114  Q
    |||||||||||||  |||||||||||| |||  ||||||||| ||||||||||| |||||||   |||||| ||||||||| | | ||| ||   |||||    
T  19270760 ggaaggagatgttccccaagaaacaatagaagaagatgttgtccaagaaacaatggaaggag---atgttctccaagaaacgatgaaagaag---atgtt 19270667  T
Q  115 cgccaagaaacaatggaaggagatgttatccaagaaa 151  Q
     |||||||||||||||||| |||||||  ||||||||    
T  19270666 tgccaagaaacaatggaagaagatgtttgccaagaaa 19270630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 19270787 - 19270639
Alignment:
Q  15 ggaaggagatgttatccaagaaacaatggaaatagatgttgttcaagaaacaatagaaggagatcatgttcgccaagaaacaacggaaggagatcatgtt 114  Q
    ||||||||||||| |||||||||   |||||  |||||||   |||||||||||||||| ||||  |||   ||||||||||| ||||||||||   |||    
T  19270787 ggaaggagatgttgtccaagaaaagttggaaggagatgttccccaagaaacaatagaagaagatgttgt---ccaagaaacaatggaaggagat---gtt 19270694  T
Q  115 cgccaagaaacaatggaaggagatgttatccaagaaacaatggaaggggatgttt 169  Q
    | ||||||||| ||| ||| |||||||  |||||||||||||||||  |||||||    
T  19270693 ctccaagaaacgatgaaagaagatgtttgccaagaaacaatggaagaagatgttt 19270639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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