View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14149_high_5 (Length: 519)

Name: NF14149_high_5
Description: NF14149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14149_high_5
NF14149_high_5
[»] chr6 (3 HSPs)
chr6 (1-509)||(13608216-13608723)
chr6 (48-111)||(33412747-33412810)
chr6 (48-111)||(33390902-33390965)
[»] chr8 (1 HSPs)
chr8 (1-506)||(6472928-6473430)
[»] chr4 (8 HSPs)
chr4 (35-506)||(31244228-31244699)
chr4 (393-479)||(31150836-31150922)
chr4 (44-112)||(31482036-31482104)
chr4 (429-495)||(31159718-31159784)
chr4 (48-101)||(31476204-31476257)
chr4 (78-111)||(31496174-31496207)
chr4 (426-479)||(31496522-31496575)
chr4 (75-111)||(31501341-31501377)
[»] chr7 (1 HSPs)
chr7 (295-506)||(14723997-14724214)
[»] chr5 (1 HSPs)
chr5 (295-506)||(17599636-17599853)


Alignment Details
Target: chr6 (Bit Score: 476; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 509
Target Start/End: Original strand, 13608216 - 13608723
Alignment:
Q  1 gtagtagcatccaaactgtctcttcatctaggaggatgaaatggaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13608216 gtagtagcatccaaactgtctcttcatctaggaggatgaaatggaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactga 13608315  T
Q  101 tcatctttttggcgctcttcataaaaatgacattgttgcattcagagatgatacaaacctnnnnnnnggggaacatatatcatccaagcttgaacaagcc 200  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||    
T  13608316 tcatctttttggcgctct-cataaaaatgacattgttgcattcagagatgatacaaacctaaaaaaaggggaacatatatcatccaagcttgaacaagcc 13608414  T
Q  201 attgaaggatcccatattttgattgttatcttctcaagaaactatgcttcttccacatggtgcttacaagaactggcaaaaattgctgaatactttgaag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13608415 attgaaggatcccatattttgattgttatcttctcaagaaactatgcttcttccacatggtgcttacaagaactggcaaaaattgctgaatactttgaag 13608514  T
Q  301 tatcaggacaaactgttctacctattttctatgatgtgagtccatctgcggtacgaaagcaaagcggagattatgaaaaagcctttcaaaagcatgaaga 400  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13608515 tatcaggacaaactgttctacctattttctatgatgcgagtccatctgcggtacgaaagcaaagcggagattatgaaaaagcctttcaaaagcatgaaga 13608614  T
Q  401 aagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaaggataagtaagtagta 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13608615 aagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaaggataagtaagtagta 13608714  T
Q  501 ttttctctg 509  Q
    |||||||||    
T  13608715 ttttctctg 13608723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 33412810 - 33412747
Alignment:
Q  48 tatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttg 111  Q
    |||||||||||||| | |||| | || |||||||| |||||||||||||||||| |||||||||    
T  33412810 tatgatgtgtttgtcaccttcagaggtgaagacactcgcaacaatttcactgattatctttttg 33412747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 33390965 - 33390902
Alignment:
Q  48 tatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttg 111  Q
    |||||||||||||| | |||||| || |||||||| ||||||||||||| ||||  ||||||||    
T  33390965 tatgatgtgtttgtcaccttccgaggtgaagacactcgcaacaatttcattgattttctttttg 33390902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 6473430 - 6472928
Alignment:
Q  1 gtagtagcatccaaactgtctcttcatctaggaggatgaaatggaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactga 100  Q
    ||||||||||||||| ||||||||||  ||||||||   |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||    
T  6473430 gtagtagcatccaaagtgtctcttcaaataggagga---aatggaaatatgatgtgtttgtgagctttcgaggcgaagacacgcgcaacaatttcactga 6473334  T
Q  101 tcatctttttggcgctcttcataaaaatgacattgttgcattcagagatgatacaaacctnnnnnnnggggaacatatatcatccaagcttgaacaagcc 200  Q
    |||||||||||| |||||||||||||||  ||||||||  ||||| ||||||| ||||||       |||| | | ||||||||  ||||   ||||||     
T  6473333 tcatctttttggtgctcttcataaaaatcgcattgttgtcttcagggatgatataaacctaaaaaaagggggaaacatatcatctgagctcctacaagct 6473234  T
Q  201 attgaaggatcccatattttgattgttatcttctcaagaaactatgcttcttccacatggtgcttacaagaactggcaaaaattgctgaatactttgaag 300  Q
    ||  ||| ||| ||||| |||||||| || ||||||| ||||||||||||||||||||||||||| |||||| ||| ||| |||||||| | | |  | |    
T  6473233 ataaaagaatctcatatcttgattgtaattttctcaaaaaactatgcttcttccacatggtgcttgcaagaattggtaaatattgctgattgcatccatg 6473134  T
Q  301 tatcaggacaaactgttctacctattttctatgatgtgagtccatctgcggtacgaaagcaaagcggagattatgaaaaagcctttcaaaagcatgaaga 400  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||| ||||||   |||||| |||    
T  6473133 tacaaggacaaactgttctacctattttctatgatgtgagtccatctgaggtacgaaaacaaaccggagattatgaaaaaccctttcttgagcatggaga 6473034  T
Q  401 aagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaaggataagtaagtagta 500  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6473033 aagattcaaaggaaacttagaggcagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatataaaggataagtaagtagta 6472934  T
Q  501 ttttct 506  Q
    ||||||    
T  6472933 ttttct 6472928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 35 - 506
Target Start/End: Original strand, 31244228 - 31244699
Alignment:
Q  35 gatgaaatggaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttggcgctcttcataaaaatgacatt 134  Q
    |||||||||||||||||||||||||||||||||  | || |  ||||| |||||||||||||||||||| ||||||||| |||| |||||||| | ||||    
T  31244228 gatgaaatggaaatatgatgtgtttgtgagctttagaggtggcgacacacgcaacaatttcactgatcacctttttggcactctccataaaaaaggcatt 31244327  T
Q  135 gttgcattcagagatgatacaaacctnnnnnnnggggaacatatatcatccaagcttgaacaagccattgaaggatcccatattttgattgttatcttct 234  Q
    ||| | ||||| ||||||||||| ||       |||||| ||||||||||  |||||  |||||| ||||||||||||| |||||||||||||||||| |    
T  31244328 gttaccttcagggatgatacaaagctcaagaaaggggaaaatatatcatctgagcttctacaagctattgaaggatcccgtattttgattgttatctttt 31244427  T
Q  235 caagaaactatgcttcttccacatggtgcttacaagaactggcaaaaattgctgaatactttgaagtatcaggacaaactgttctacctattttctatga 334  Q
    |||| |||||||||||||| || ||||||||  | ||||| | ||| |||||||||| | |||||||| ||||||||| |||||||||||||||||||||    
T  31244428 caaggaactatgcttcttcaacgtggtgcttgaaggaactagtaaagattgctgaatgcattgaagtaacaggacaaattgttctacctattttctatga 31244527  T
Q  335 tgtgagtccatctgcggtacgaaagcaaagcggagattatgaaaaagcctttcaaaagcatgaagaaagattcaaagaaaacttagaggaagtgcaaaga 434  Q
    ||||  |||||||| ||| |||||||||||||||||||||||||||||||||    | ||||||||||||||||||| ||| |||||| |||||||||||    
T  31244528 tgtggatccatctgaggtgcgaaagcaaagcggagattatgaaaaagcctttagggatcatgaagaaagattcaaaggaaatttagagaaagtgcaaaga 31244627  T
Q  435 tggaggggagccctaacacaagtagccaatctctctggttgggatatgaaggataagtaagtagtattttct 506  Q
    ||||| ||||||||| ||||||||||| | ||||||||||||||| | | |||| |||||||||| ||||||    
T  31244628 tggagaggagccctagcacaagtagccgaactctctggttgggatgtaagggatcagtaagtagtcttttct 31244699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 393 - 479
Target Start/End: Complemental strand, 31150922 - 31150836
Alignment:
Q  393 catgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat 479  Q
    ||||||||||||||| || ||||||| ||    |||||||||||||||| ||| || |||||||| |||||||||||||| ||||||    
T  31150922 catgaagaaagattccaacaaaactttgaaattgtgcaaagatggagggaagcactgacacaagtggccaatctctctggatgggat 31150836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 44 - 112
Target Start/End: Original strand, 31482036 - 31482104
Alignment:
Q  44 gaaatatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgatcatctttttgg 112  Q
    ||||||||| ||||||||||| ||| |||| || ||||| || ||||| ||||||||||||||||||||    
T  31482036 gaaatatgacgtgtttgtgagtttctgtggtgatgacacacgtaacaaattcactgatcatctttttgg 31482104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 429 - 495
Target Start/End: Complemental strand, 31159784 - 31159718
Alignment:
Q  429 caaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaaggataagtaag 495  Q
    ||||||||||||| |   ||||||||||| |||||||||||||||||||||||| |  |||||||||    
T  31159784 caaagatggagggcaagtctaacacaagtcgccaatctctctggttgggatatgcatcataagtaag 31159718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 31476204 - 31476257
Alignment:
Q  48 tatgatgtgtttgtgagcttccgtggcgaagacacgcgcaacaatttcactgat 101  Q
    ||||| ||||||||||||||| | || ||||| || ||||||||||||||||||    
T  31476204 tatgacgtgtttgtgagcttcagaggtgaagatactcgcaacaatttcactgat 31476257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 31496174 - 31496207
Alignment:
Q  78 gacacgcgcaacaatttcactgatcatctttttg 111  Q
    ||||| ||||||||||||||||||||||||||||    
T  31496174 gacactcgcaacaatttcactgatcatctttttg 31496207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 426 - 479
Target Start/End: Original strand, 31496522 - 31496575
Alignment:
Q  426 gtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggat 479  Q
    |||||||||||||||| ||| |||| |||||| ||  |||||||||||||||||    
T  31496522 gtgcaaagatggagggaagctctaatacaagtcgctgatctctctggttgggat 31496575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 31501341 - 31501377
Alignment:
Q  75 gaagacacgcgcaacaatttcactgatcatctttttg 111  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  31501341 gaagacactcgcaacaatttcacttatcatctttttg 31501377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 295 - 506
Target Start/End: Original strand, 14723997 - 14724214
Alignment:
Q  295 ttgaagtatcaggacaaactgttctacctattttctatgatgtgagtccatctgcggtacgaaagcaaagcggagattatgaaaaagcctttcaaaagc- 393  Q
    |||||||||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||| ||| |||| ||||||||||||| ||||| ||||     
T  14723997 ttgaagtatcaggacaaattgttctacctattttctatgacgggagtccatctgaggtacgaaagaaaaacggaaattatgaaaaagcttttcagaagca 14724096  T
Q  394 -------atgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaagg 486  Q
           |||||| ||||||||||||||| ||||||||  |||||| ||||||||||||| || |||||||||||||  || |||| ||| |||| ||||    
T  14724097 tgaatcaatgaagcaagattcaaagaaaatttagaggatttgcaaatatggaggggagccttagcacaagtagccaa--tccctggctggaatataaagg 14724194  T
Q  487 ataagtaagtagtattttct 506  Q
    || ||||||| |||||||||    
T  14724195 atcagtaagttgtattttct 14724214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 295 - 506
Target Start/End: Complemental strand, 17599853 - 17599636
Alignment:
Q  295 ttgaagtatcaggacaaactgttctacctattttctatgatgtgagtccatctgcggtacgaaagcaaagcggagattatgaaaaagcctttcaaaagc- 393  Q
    ||||| |||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| ||| |||| ||||||||||||| ||||| ||||     
T  17599853 ttgaactatcaggacaaactgttctacctattttctatgacgggagtccatctgaggtacgaaagaaaaacggaaattatgaaaaagcttttcagaagca 17599754  T
Q  394 -------atgaagaaagattcaaagaaaacttagaggaagtgcaaagatggaggggagccctaacacaagtagccaatctctctggttgggatatgaagg 486  Q
           |||||| ||||||||||||||| ||||||||  |||||| ||||||||| ||| |||| |||||||||||  || |||| ||| |||| ||||    
T  17599753 tgaatcaatgaagcaagattcaaagaaaatttagaggatttgcaaatatggaggggtgccttaactcaagtagccaa--tccctggctggaatataaagg 17599656  T
Q  487 ataagtaagtagtattttct 506  Q
    || ||||||| |||||||||    
T  17599655 atcagtaagttgtattttct 17599636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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