View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14149_high_9 (Length: 315)
Name: NF14149_high_9
Description: NF14149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14149_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 43602040 - 43601739
Alignment:
| Q |
1 |
ctggttaagttaagtggataacaattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcaga |
100 |
Q |
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| T |
43602040 |
ctggttaagttaagtggataacgattctataaattaatagctctggcacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcaga |
43601941 |
T |
|
| Q |
101 |
gacaactttatcatgtgcggggctgtgttttggtgcagaagtaattttcataatttgaagatatcatatcaattggagacataattctcagttccctttc |
200 |
Q |
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| T |
43601940 |
gacaactttatcatgtgcggggctgtgttttggtgcagaaataattttcataatttgaagatatcatatcaattggagacataattctcagttccctttc |
43601841 |
T |
|
| Q |
201 |
agttgtactcagtctagcatatgcccagatttatatcagcatttgccaattgccattgcaacttcgcacaaagcatcattaaaattataataaccacagg |
300 |
Q |
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| T |
43601840 |
agttgtactcagtctagcatatgcccagatttatagcagcatttgccaattgccaatgcaacttcgcacaaagcatcattaaaattataataaccacagg |
43601741 |
T |
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| Q |
301 |
tt |
302 |
Q |
| |
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|| |
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| T |
43601740 |
tt |
43601739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 47 - 167
Target Start/End: Original strand, 22436220 - 22436340
Alignment:
| Q |
47 |
cacgtgatgcacgtgacagactgcaaattattgtcaagtggaactgttttcagagacaactttatcatgtgcggggctgtgttttggtgcagaagtaatt |
146 |
Q |
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| T |
22436220 |
cacgtgatgcatgtgacagaccgcaaattattgtcaattggaaccgttataagaggcaactttatcatgtgcgggagtatgttttggtgcagaaatcatt |
22436319 |
T |
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| Q |
147 |
ttcataatttgaagatatcat |
167 |
Q |
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|||||||||| |||||||||| |
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| T |
22436320 |
ttcataattttaagatatcat |
22436340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 22239084 - 22239135
Alignment:
| Q |
116 |
tgcggggctgtgttttggtgcagaagtaattttcataatttgaagatatcat |
167 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
22239084 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
22239135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 37560602 - 37560653
Alignment:
| Q |
116 |
tgcggggctgtgttttggtgcagaagtaattttcataatttgaagatatcat |
167 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||| |||||||||| |
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| T |
37560602 |
tgcgggactgtgttttggtgcagaaataattttcataattttaagatatcat |
37560653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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