View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14149_low_2 (Length: 317)
Name: NF14149_low_2
Description: NF14149
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14149_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 300
Target Start/End: Complemental strand, 42833724 - 42833431
Alignment:
| Q |
1 |
tacttgactttcttaataacagttaaagttcaagcaaaacaagttatctataagcacagggacaccaagtgtaactacatatgtttcggtgtcatgtcgg |
100 |
Q |
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| T |
42833724 |
tacttgactttcttaataacagttcaagttcaagcaaaacgagttatctataagcacagggacaccaagtgtaactgcataagtttcggtgtcatgtcgg |
42833625 |
T |
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| Q |
101 |
tgtttgacaagtacatgtttggaacactggacacaccttaattcaaaaggtgtcattaacattaactcaaatatttatcaaaattttaaaatcctactgg |
200 |
Q |
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| T |
42833624 |
tgtttgacaagtacatgtttggaacactggacacaccttaattcaaaaagtgtcat------taactcaaatatttatcaaaattttaaaatcctactgg |
42833531 |
T |
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| Q |
201 |
ttgaataagtaacattaactaacacgtaaaattgaccatgggactttcttcataacagttcaagttcaagcaaaaagagagttatctatagcgcacaagg |
300 |
Q |
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| T |
42833530 |
ttgaataagtaacattaactaacacgtaaaattgacaatgagactttcttcataacagttcaagttcaggcaaaaagagagttatctatagcgcacaagg |
42833431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 180 - 275
Target Start/End: Complemental strand, 42833781 - 42833686
Alignment:
| Q |
180 |
aaaattttaaaatcctactggttgaataagtaacattaactaacacgtaaaattgaccatgggactttcttcataacagttcaagttcaagcaaaa |
275 |
Q |
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| T |
42833781 |
aaaattttaaaattccactagttgaataagtaacattaactaacacgtaaaattgactacttgactttcttaataacagttcaagttcaagcaaaa |
42833686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 149
Target Start/End: Complemental strand, 42833489 - 42833344
Alignment:
| Q |
6 |
gactttcttaataacagttaaagttcaagcaaaacaag--ttatctataa-gcacagggacaccaagtgtaactacatatgtttcggtgtcatgtcggtg |
102 |
Q |
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| T |
42833489 |
gactttcttcataacagttcaagttcaggcaaaaagagagttatctatagcgcacaaggacaccgagtgtaactaca-atgtttgggtgtcgtgtcggta |
42833391 |
T |
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| Q |
103 |
tttgacaagtacatgtttggaacactggacacaccttaattcaaaag |
149 |
Q |
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| T |
42833390 |
cttgacaagtatatgtataaaacatcggacacaccttcaatcaaaag |
42833344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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