View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1414_low_1 (Length: 366)
Name: NF1414_low_1
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1414_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 5 - 350
Target Start/End: Complemental strand, 7809751 - 7809409
Alignment:
| Q |
5 |
tctcttaaagtgtttgtatgtggaagagtgttgtaaaactattgagatacgaagtggtcaaaactagataacaattcaagnnnnnnnngcgaaaaaagat |
104 |
Q |
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| T |
7809751 |
tctcttaaattgtttgtatgtgggagagtgttgtaaaacttttgagatacgaaatggtcaaaactaggtaacaattcaagttttttta-cgaaaaaagat |
7809653 |
T |
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| Q |
105 |
aacctcatttactgataaactatattgtccaataaaggatcgtatcgtttacaagtccaatataaggtagagataaatttatttaatagacttgaaaatg |
204 |
Q |
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| T |
7809652 |
aacctcatttactgataaattatattgtccaataaaggatcgtatcgtttacaagtccaatataaggtagagataaattaatttaatagacttgaaaatg |
7809553 |
T |
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| Q |
205 |
atgtaaaatggctaataaatggtcaaattgttttacatggacaaatagaaaattgcacaaacttatcatgaattttcaatccctcgtccgtatcaataat |
304 |
Q |
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| T |
7809552 |
atgtaaaatggctaataaatggtcaaattgttttacatggacaaatag--aattgcacaaacttatcatgaattttcaatccctcgtccgtatcaataat |
7809455 |
T |
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| Q |
305 |
atggcaattggcaattgccacccaatccaaaggtcactctcaatat |
350 |
Q |
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| T |
7809454 |
atggcaattggcaattgccacccaatccaaaggtcactctcaatat |
7809409 |
T |
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