View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1414_low_10 (Length: 256)
Name: NF1414_low_10
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1414_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 18 - 242
Target Start/End: Complemental strand, 3144522 - 3144298
Alignment:
| Q |
18 |
gagaatgaaaaagagagaaaacgtgttaaggtaatgaaggaaatgaatgcagttaataatgttagttggtgaatgaagtcagaaataatagagaaagtga |
117 |
Q |
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| T |
3144522 |
gagaatgaaaaagagagaaaacgtgttaaggtaatgaaggaaatgaatgcagttaataatgtaagttggtgaatgaagtcagaaataatagagaaagtga |
3144423 |
T |
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| Q |
118 |
agaagagagagtaatggtcgccgccttatttgcttaaaaccaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3144422 |
agaagagagagtaatggtcgccgccttatttgcttaaaactaagtccaagatgagttaagattatggttggggcgcaaatctcaaaagagtgaatgagag |
3144323 |
T |
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| Q |
218 |
aggtctgtactctgtggtctctgct |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
3144322 |
aggtctgtactctgtggtctctgct |
3144298 |
T |
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