View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1414_low_14 (Length: 222)
Name: NF1414_low_14
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1414_low_14 |
 | |
|
| [»] scaffold0684 (1 HSPs) |
| | |
|
| [»] scaffold0163 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 21492968 - 21493181
Alignment:
| Q |
2 |
ccgtcattcctcccaactctattggtccaaatctcggagtagttgatgggcaaaatgctttcaatcaatttgttggtgtagagtttgactcttatgccaa |
101 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21492968 |
ccgtcattcctcccaactctggaggtaaatatctcggagtagttgatgtgcaaaatgctttcaatcaatttgttggtgtagagtttgactcttatgccaa |
21493067 |
T |
|
| Q |
102 |
tcagtatgatcccaagtatccacatattggaattaatgttaactctttaatttcccgcaggacaacaccatggaataaggtaagtgggtcattagtcaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21493068 |
tcagtatgatcccaagtatccacatattggaattgatgttaactctttaatttcccgcaggacaacaacatggaataaggtaagtgggtcattagtcaaa |
21493167 |
T |
|
| Q |
202 |
gtaagtataatcta |
215 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
21493168 |
gtaaatataatcta |
21493181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 2 - 212
Target Start/End: Original strand, 21482816 - 21483026
Alignment:
| Q |
2 |
ccgtcattcctcccaactctattggtccaaatctcggagtagttgatgggcaaaatgctttcaatcaatttgttggtgtagagtttgactcttatgccaa |
101 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21482816 |
ccgtcattcctcccaactctggaggttcaaatctcggagtagttgatgcgcaaaatgctttcaatcaatttgttggtgtagagtttgactcttatgccaa |
21482915 |
T |
|
| Q |
102 |
tcagtatgatcccaagtatccacatattggaattaatgttaactctttaatttcccgcaggacaacaccatggaataaggtaagtgggtcattagtcaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||| | ||| |||||||||||||||||| |
|
|
| T |
21482916 |
tcagtatgatcccaagtatccacatattggaattgatgttaactctgtaatttcctccaggacaacaccatggaacagggtgagtgggtcattagtcaaa |
21483015 |
T |
|
| Q |
202 |
gtaagtataat |
212 |
Q |
| |
|
||||||||||| |
|
|
| T |
21483016 |
gtaagtataat |
21483026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 21489155 - 21489374
Alignment:
| Q |
2 |
ccgtcattcctcccaactctattggtccaaatctcggagtagttgatgggcaaaatgctttcaatcaatttgttggtgtagagtttgactcttatgccaa |
101 |
Q |
| |
|
|||| ||||||| ||||||| | ||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||| | ||||||| |
|
|
| T |
21489155 |
ccgtaattcctcacaactctgtgggttcaaaactcggagtagttgatgggaaaaatgctttcaatcaatttgttggtgtcgagtttgatagtcatgccaa |
21489254 |
T |
|
| Q |
102 |
tca------gtatgatcccaagtatccacatattggaattaatgttaactctttaatttcccgcaggacaacaccatggaataaggtaagtgggtcatta |
195 |
Q |
| |
|
| | || ||||||||| ||| |||||||||||||| |||||||||| |||| || ||| |||||||||||||| | ||| ||||||||||| |
|
|
| T |
21489255 |
taagttagtgtttgatcccaattatgcacatattggaattgatgttaactcagtaatatcatccagtacaacaccatggaacagggtgagtgggtcattg |
21489354 |
T |
|
| Q |
196 |
gtcaaagtaagtataatcta |
215 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
21489355 |
gtgaaagtaagtataatcta |
21489374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 41047352 - 41047257
Alignment:
| Q |
55 |
aatgctttcaatcaatttgttggtgtagagtttgactcttatgccaatcagtatgatcccaagtatccacatattggaattaatgttaactcttta |
150 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| ||||||||||| | |||||| |||| ||||||||||||| |||| ||||||||| |
|
|
| T |
41047352 |
aatgcttttaataaatttgttggtgtagagtttgacacttatgccaatacatgggatcccccatatcaacatattggaattgatgtcaactcttta |
41047257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Original strand, 41043874 - 41043911
Alignment:
| Q |
53 |
aaaatgctttcaatcaatttgttggtgtagagtttgac |
90 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41043874 |
aaaatgcttacaatcaatttgttggtgtagagtttgac |
41043911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 90
Target Start/End: Original strand, 41037834 - 41037869
Alignment:
| Q |
55 |
aatgctttcaatcaatttgttggtgtagagtttgac |
90 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |
|
|
| T |
41037834 |
aatgcttacaatcaatttgttggtgtagagtttgac |
41037869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 155
Target Start/End: Original strand, 41066001 - 41066124
Alignment:
| Q |
32 |
atctcggagtagttgatgggcaaaatgctttcaatcaatttgttggtgtagagtttgactcttatgccaatcagtatgatcccaagtatccacatattgg |
131 |
Q |
| |
|
|||| |||||||||||| ||||| ||| |||||||||||||||||||||||||||| |||| ||||| | ||||||||| ||||||||| |
|
|
| T |
41066001 |
atcttggagtagttgattcaaaaaatacttacaatcaatttgttggtgtagagtttgacctttatcccaatagttttgatcccaatacgaaacatattgg |
41066100 |
T |
|
| Q |
132 |
aattaatgttaactctttaatttc |
155 |
Q |
| |
|
||| |||| |||||||||||||| |
|
|
| T |
41066101 |
aatcgatgtcaactctttaatttc |
41066124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 41074111 - 41074145
Alignment:
| Q |
55 |
aatgctttcaatcaatttgttggtgtagagtttga |
89 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
41074111 |
aatgcttacaatcaatttgttggtgtagagtttga |
41074145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 89
Target Start/End: Original strand, 41089212 - 41089248
Alignment:
| Q |
53 |
aaaatgctttcaatcaatttgttggtgtagagtttga |
89 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| |
|
|
| T |
41089212 |
aaaatgcattcaatcaatttattggtgtagagtttga |
41089248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0684 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0684
Description:
Target: scaffold0684; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Original strand, 3196 - 3294
Alignment:
| Q |
57 |
tgctttcaatcaatttgttggtgtagagtttgactcttatgccaatcagtatgatcccaagtatccacatattggaattaatgttaactctttaatttc |
155 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| ||||| |||| | | ||||| | ||| | |||||||||||| |||| |||||||| ||||| |
|
|
| T |
3196 |
tgctttcaatcgatttgttggtgtagaatttgacaattatgtcaatgaatgggatcctgattatgctcatattggaattgatgtcaactctttgatttc |
3294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0163 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0163
Description:
Target: scaffold0163; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 155
Target Start/End: Complemental strand, 4922 - 4824
Alignment:
| Q |
57 |
tgctttcaatcaatttgttggtgtagagtttgactcttatgccaatcagtatgatcccaagtatccacatattggaattaatgttaactctttaatttc |
155 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||| ||||| |||| | | ||||| | ||| | |||||||||||| |||| |||||||| ||||| |
|
|
| T |
4922 |
tgctttcaatcgatttgttggtgtagaatttgacaattatgtcaatgaatgggatcctgattatgctcatattggaattgatgtcaactctttgatttc |
4824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University