View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1414_low_15 (Length: 221)

Name: NF1414_low_15
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1414_low_15
NF1414_low_15
[»] chr6 (6 HSPs)
chr6 (15-168)||(28012749-28012905)
chr6 (67-165)||(27907244-27907342)
chr6 (42-168)||(27996423-27996549)
chr6 (103-162)||(28087474-28087533)
chr6 (109-156)||(28027569-28027616)
chr6 (111-160)||(27926350-27926399)
[»] chr4 (2 HSPs)
chr4 (166-205)||(44133677-44133716)
chr4 (169-206)||(47540280-47540317)
[»] chr8 (1 HSPs)
chr8 (165-206)||(10653668-10653709)
[»] chr7 (4 HSPs)
chr7 (169-206)||(18067814-18067851)
chr7 (167-206)||(44196100-44196139)
chr7 (166-206)||(24267533-24267573)
chr7 (169-205)||(31009529-31009565)
[»] chr1 (3 HSPs)
chr1 (165-206)||(24611989-24612030)
chr1 (168-206)||(24910022-24910060)
chr1 (166-206)||(1724120-1724160)
[»] chr5 (7 HSPs)
chr5 (165-205)||(33626523-33626563)
chr5 (103-162)||(1436118-1436177)
chr5 (166-201)||(25255396-25255431)
chr5 (166-201)||(25319186-25319221)
chr5 (168-206)||(4878162-4878200)
chr5 (167-205)||(20591361-20591399)
chr5 (169-206)||(39191723-39191760)


Alignment Details
Target: chr6 (Bit Score: 123; Significance: 2e-63; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 28012749 - 28012905
Alignment:
Q  15 ttctcctaggtctaggggggttggtg---gagatttaattgagcatcccaaaatgattgctcttaactacctcaagaatgactttatcattgacttcttt 111  Q
    |||||||||||| |||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28012749 ttctcctaggtccaggggggttggtgctggagatttaattgaccatcccaaaatgattgctcttaactacctcaagaatgactttctcattgacttcttt 28012848  T
Q  112 gttgcattacctcttcctcaggtacatttcttcctatcgctccatgttgttgttaaa 168  Q
     ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28012849 attgcattacctcttcctcaggtacatttcttcctatcgctccacgttgttgttaaa 28012905  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 67 - 165
Target Start/End: Original strand, 27907244 - 27907342
Alignment:
Q  67 attgctcttaactacctcaagaatgactttatcattgacttctttgttgcattacctcttcctcaggtacatttcttcctatcgctccatgttgttgtt 165  Q
    ||||||||||| ||||| |||||| ||||| || | |||||  ||| ||||| |||||||||||||||| |||||||| |||| |||||||||||||||    
T  27907244 attgctcttaattaccttaagaattactttttcttcgacttacttgctgcatcacctcttcctcaggtatatttcttcttatctctccatgttgttgtt 27907342  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 168
Target Start/End: Original strand, 27996423 - 27996549
Alignment:
Q  42 agatttaattgagcatcccaaaatgattgctcttaactacctcaagaatgactttatcattgacttctttgttgcattacctcttcctcaggtacatttc 141  Q
    ||||||| |||| |||||||  |  ||||||| ||||||| | |||  | ||||| | || ||||| |||||||||| |||||||||||||||| ||||     
T  27996423 agatttagttgaccatcccacgagaattgctcataactacttgaagggttacttttttatcgacttatttgttgcatcacctcttcctcaggtatattta 27996522  T
Q  142 ttcctatcgctccatgttgttgttaaa 168  Q
    |||| ||| ||||| ||||||||||||    
T  27996523 ttcccatctctccaagttgttgttaaa 27996549  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 28087474 - 28087533
Alignment:
Q  103 gacttctttgttgcattacctcttcctcaggtacatttcttcctatcgctccatgttgtt 162  Q
    ||||| ||||||| || |||||||||||||||| || |||||||||| ||||||||||||    
T  28087474 gacttatttgttgtatcacctcttcctcaggtatatatcttcctatctctccatgttgtt 28087533  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 156
Target Start/End: Original strand, 28027569 - 28027616
Alignment:
Q  109 tttgttgcattacctcttcctcaggtacatttcttcctatcgctccat 156  Q
    ||||||| ||||||||||||||||||| || |||||||||| ||||||    
T  28027569 tttgttgtattacctcttcctcaggtatatgtcttcctatctctccat 28027616  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 27926399 - 27926350
Alignment:
Q  111 tgttgcattacctcttcctcaggtacatttcttcctatcgctccatgttg 160  Q
    ||||| || |||||||||||||||| ||||||||||||| |||| |||||    
T  27926399 tgttgtatcacctcttcctcaggtatatttcttcctatctctccttgttg 27926350  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 205
Target Start/End: Complemental strand, 44133716 - 44133677
Alignment:
Q  166 aaagagttgtgatatttgtacaactatgtctaacaacttt 205  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  44133716 aaagagttgtgatatttgtacaactatatctaacaacttt 44133677  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Complemental strand, 47540317 - 47540280
Alignment:
Q  169 gagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    |||||||||||||||||||||||| |||||||||||||    
T  47540317 gagttgtgatatttgtacaactatatctaacaactttg 47540280  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 10653668 - 10653709
Alignment:
Q  165 taaagagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  10653668 taaagagttgtgatatttgtacaaccatatctaacaactttg 10653709  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 18067814 - 18067851
Alignment:
Q  169 gagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    |||||||||||||||||||||||| |||||||||||||    
T  18067814 gagttgtgatatttgtacaactatatctaacaactttg 18067851  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 206
Target Start/End: Original strand, 44196100 - 44196139
Alignment:
Q  167 aagagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    ||||||||| |||||||||||||||| |||||||||||||    
T  44196100 aagagttgtaatatttgtacaactatatctaacaactttg 44196139  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 24267533 - 24267573
Alignment:
Q  166 aaagagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    |||||||| ||||||||||||||| || |||||||||||||    
T  24267533 aaagagttatgatatttgtacaaccatatctaacaactttg 24267573  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 31009529 - 31009565
Alignment:
Q  169 gagttgtgatatttgtacaactatgtctaacaacttt 205  Q
    ||||||||||||||||||||| || ||||||||||||    
T  31009529 gagttgtgatatttgtacaaccatatctaacaacttt 31009565  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 24612030 - 24611989
Alignment:
Q  165 taaagagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    ||||||||||||||||||||||||| || |||||||||||||    
T  24612030 taaagagttgtgatatttgtacaaccatatctaacaactttg 24611989  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 24910022 - 24910060
Alignment:
Q  168 agagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    |||||||||||||||||||||| || |||||||||||||    
T  24910022 agagttgtgatatttgtacaaccatatctaacaactttg 24910060  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 1724120 - 1724160
Alignment:
Q  166 aaagagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    |||||||| ||||||||||||||| || |||||||||||||    
T  1724120 aaagagttatgatatttgtacaaccatatctaacaactttg 1724160  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 205
Target Start/End: Original strand, 33626523 - 33626563
Alignment:
Q  165 taaagagttgtgatatttgtacaactatgtctaacaacttt 205  Q
    ||||||||||||||||||||||||| || ||||||||||||    
T  33626523 taaagagttgtgatatttgtacaaccatatctaacaacttt 33626563  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 1436118 - 1436177
Alignment:
Q  103 gacttctttgttgcattacctcttcctcaggtacatttcttcctatcgctccatgttgtt 162  Q
    ||||| ||||||| || |||| ||||||||||| || |||||||||| ||||||||||||    
T  1436118 gacttatttgttgtatcacctattcctcaggtatatatcttcctatctctccatgttgtt 1436177  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 25255431 - 25255396
Alignment:
Q  166 aaagagttgtgatatttgtacaactatgtctaacaa 201  Q
    |||||||||||||||||||||||| |||||||||||    
T  25255431 aaagagttgtgatatttgtacaaccatgtctaacaa 25255396  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 201
Target Start/End: Complemental strand, 25319221 - 25319186
Alignment:
Q  166 aaagagttgtgatatttgtacaactatgtctaacaa 201  Q
    |||||||||||||||||||||||| |||||||||||    
T  25319221 aaagagttgtgatatttgtacaaccatgtctaacaa 25319186  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 4878162 - 4878200
Alignment:
Q  168 agagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    |||||||||||||||||||||| || |||||||||||||    
T  4878162 agagttgtgatatttgtacaaccatatctaacaactttg 4878200  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Original strand, 20591361 - 20591399
Alignment:
Q  167 aagagttgtgatatttgtacaactatgtctaacaacttt 205  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  20591361 aagagttgtgatatttgtacaaccatatctaacaacttt 20591399  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 206
Target Start/End: Original strand, 39191723 - 39191760
Alignment:
Q  169 gagttgtgatatttgtacaactatgtctaacaactttg 206  Q
    ||||||||||||||||||||| || |||||||||||||    
T  39191723 gagttgtgatatttgtacaaccatatctaacaactttg 39191760  T

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