View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1414_low_19 (Length: 209)
Name: NF1414_low_19
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1414_low_19 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 167; Significance: 1e-89; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 9439374 - 9439544
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439374 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
9439473 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9439474 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
9439544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 9444094 - 9444264
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444094 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
9444193 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9444194 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
9444264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 4799371 - 4799315
Alignment:
| Q |
40 |
acaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacaca |
96 |
Q |
| |
|
||||||||||||||| | |||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
4799371 |
acaaaatattatcacactgctaaaataagagatgagaaaagagaaattgaacacaca |
4799315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 1e-89; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 1235016 - 1234846
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1235016 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
1234917 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1234916 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
1234846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 27878711 - 27878881
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878711 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
27878810 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27878811 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
27878881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 26976133 - 26976303
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976133 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
26976232 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26976233 |
taaggggaaaaaaccaaggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
26976303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 27873992 - 27874162
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27873992 |
ttaggtaccagagtaacaaaatattatcacgcatctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
27874091 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27874092 |
taaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
27874162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 18968192 - 18968041
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
18968192 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaatacataatattttacgtggaaacccctcaacaaa |
18968093 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
18968092 |
taaggggaaaaaaccacggggcaagagtagaaaactttcactaagtggaaga |
18968041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 30986827 - 30986653
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaa---acccctcaac |
121 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
30986827 |
ttaggtatcagagtaacaaaatattatcacgtagctaaaataagagacgagaaaagaggaactgaacgcacaata-tttacgtggaaagtacccctcaac |
30986729 |
T |
|
| Q |
122 |
aaataagg--ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
30986728 |
aaataaggaaaaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattgcaggacctctctct |
30986653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 69 - 195
Target Start/End: Complemental strand, 30966923 - 30966797
Alignment:
| Q |
69 |
agacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa-aaaaccacggggcaagagtagagaactttcacta |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| || |||| ||||||||||||||||||||||||||||| |
|
|
| T |
30966923 |
agacgagaaaagaggaactgaacacacaatattt-acgtggaaacccatcaacaaataagggaaataaaatcacggggcaagagtagagaactttcacta |
30966825 |
T |
|
| Q |
168 |
agtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
||||||||||||| ||| ||||| |||| |
|
|
| T |
30966824 |
agtggaagaaattgcagaacctctctct |
30966797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 28 - 195
Target Start/End: Complemental strand, 21966860 - 21966696
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
127 |
Q |
| |
|
||||||| |||||| ||| ||||||||||||||||| ||| | | ||||||||||||||| |||| | ||||||| | ||||||||||||||| |||||| |
|
|
| T |
21966860 |
ggtaccaaagtaacgaaacattatcacgcagctaaa-taacatatgagaaaagaggaactaaacataaaatattt-atgtggaaacccctcaataaataa |
21966763 |
T |
|
| Q |
128 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||||||| |||||||||||| | |||||| |||| |
|
|
| T |
21966762 |
agggaaaaatc-atggggcaagagtagagaactttcactaaatggaagaaattataagacctctctct |
21966696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 42 - 190
Target Start/End: Original strand, 23012520 - 23012666
Alignment:
| Q |
42 |
aaaatattatcacgcagctaaaataagagacgag-aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaacca |
140 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||| ||| |||||||||| || ||||||||||||| | || |||||| | ||| |||||||| |
|
|
| T |
23012520 |
aaaatattatcacgcaactaaaataagagacgagaaaaagaagaattgaacacacatta-tttacgtggaaactcgtc-acaaattaaggggaaaaacca |
23012617 |
T |
|
| Q |
141 |
cggggcaagagtagagaactttcactaagtggaagaaattacaggacctc |
190 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || |||||| |
|
|
| T |
23012618 |
-tgggcaagagtagagaactttcactaagtgagagaaatttcaagacctc |
23012666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 30967723 - 30967674
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacga |
74 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30967723 |
ttaggtaccagagtaacaaaatattatcaagcagctaaaataagagacga |
30967674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 41718725 - 41718555
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718725 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
41718626 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41718625 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
41718555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 41723451 - 41723281
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723451 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
41723352 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41723351 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
41723281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 34360271 - 34360101
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34360271 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtagaaacccctcaacaaa |
34360172 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34360171 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
34360101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 29585302 - 29585472
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585302 |
ttaggtatcagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
29585401 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29585402 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
29585472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 42 - 195
Target Start/End: Complemental strand, 34352546 - 34352393
Alignment:
| Q |
42 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352546 |
aaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccac |
34352447 |
T |
|
| Q |
142 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34352446 |
ggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
34352393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 48701823 - 48701993
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701823 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
48701922 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48701923 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
48701993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 42266218 - 42266048
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266218 |
ttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
42266119 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42266118 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
42266048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 42270937 - 42270767
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42270937 |
ttagataccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
42270838 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42270837 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
42270767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 29 - 195
Target Start/End: Original strand, 24520031 - 24520197
Alignment:
| Q |
29 |
gtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520031 |
gtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataag |
24520130 |
T |
|
| Q |
129 |
gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
24520131 |
gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
24520197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 48697133 - 48697304
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697133 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
48697232 |
T |
|
| Q |
125 |
taagggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48697233 |
taaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
48697304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 30950185 - 30950354
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950185 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagataagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
30950284 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
30950285 |
taa-gggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctct |
30950354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 30945479 - 30945648
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30945479 |
ttaggtatcagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
30945578 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
30945579 |
taa-gggaaaaaatcacggggcaagagtagagaactttcactaagtggaagaaattacagaacctctctct |
30945648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 10427595 - 10427444
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10427595 |
ttaggtaccagagtaacagaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgcggaaacccctcaacaaa |
10427496 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
176 |
Q |
| |
|
|||||||||||||| |||||| || |||||| |||||||||||||||||||| |
|
|
| T |
10427495 |
taaggggaaaaaactacggggaaaaagtagataactttcactaagtggaaga |
10427444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 36 - 136
Target Start/End: Complemental strand, 48783031 - 48782932
Alignment:
| Q |
36 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa |
135 |
Q |
| |
|
|||| |||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
48783031 |
agtatcaaaatattatcacgcgattaaaataagaaacgagaaaacaggaactgaacacacaata-tttacgtggaaatttctcaacaaataaagggaaaa |
48782933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 174
Target Start/End: Complemental strand, 17248112 - 17248015
Alignment:
| Q |
76 |
aaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaa |
174 |
Q |
| |
|
||||||| |||| || ||||||||||| || |||||| |||| || |||||||||||||||||||| || ||||||| |||||||||| ||||||||| |
|
|
| T |
17248112 |
aaaagagaaactaaatacacaatattt-acatggaaatcccttaataaataaggggaaaaaaccaccggataagagtatagaactttcattaagtggaa |
17248015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 36615361 - 36615438
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
102 |
Q |
| |
|
|||||||| ||||||| ||||||||||| | ||| |||||||||| | |||||||||| ||| ||||| ||| ||||| |
|
|
| T |
36615361 |
ttaggtactagagtaataaaatattatcgcacagttaaaataagatatgagaaaagagaaaccgaacatacattattt |
36615438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 102
Target Start/End: Complemental strand, 30165968 - 30165900
Alignment:
| Q |
34 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattt |
102 |
Q |
| |
|
|||||||||||||| |||||| || ||||||||||| | ||||||| | ||| |||||||| ||||||| |
|
|
| T |
30165968 |
agagtaacaaaataatatcacacaactaaaataagatatgagaaaaaatgaattgaacacataatattt |
30165900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 127
Target Start/End: Complemental strand, 1979604 - 1979567
Alignment:
| Q |
89 |
aacacacaatattttacgtggaaacccctcaacaaataa |
127 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
1979604 |
aacacacaatattt-acgtggaaacccctcaacaaataa |
1979567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 48782925 - 48782884
Alignment:
| Q |
154 |
gagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||| |||| |
|
|
| T |
48782925 |
gagaactttcactaagtggaagaaattagatgacctctctct |
48782884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 5823277 - 5823447
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823277 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
5823376 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5823377 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
5823447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 25 - 195
Target Start/End: Original strand, 5818515 - 5818685
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
5818515 |
ttaggtaccagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaactaa |
5818614 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5818615 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
5818685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 25 - 195
Target Start/End: Complemental strand, 54546198 - 54546029
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
54546198 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagatgagaaaagaggaactgaacatacaatattt-acgtggaaacccctcaacaaa |
54546100 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
54546099 |
taaggggaaaaaaccacggggctagagtagagaactttcactaagtggatgaaattacaggacctctctct |
54546029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 25 - 183
Target Start/End: Original strand, 2817265 - 2817422
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2817265 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagaagagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
2817364 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca |
183 |
Q |
| |
|
||| ||||||||||||| ||||||||||| |||||| |||||||||||||||||||||| |
|
|
| T |
2817365 |
taa-gggaaaaaaccacagggcaagagtaaagaactctcactaagtggaagaaattaca |
2817422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 24659138 - 24659287
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
24659138 |
ttaggtaccagagtaataaaatattatcacacagctaaaataagagatgagaaaagaggaactgaacacacaacattttacgtggaaacccctcaacaaa |
24659237 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
176 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
24659238 |
taaggggaaaaaaccacggggcaagagt--agaactttcactaagtggaaga |
24659287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 31 - 137
Target Start/End: Complemental strand, 4579360 - 4579254
Alignment:
| Q |
31 |
accagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg |
130 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579360 |
accagagtaacaaaatattatcacgcaactaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggg |
4579261 |
T |
|
| Q |
131 |
gaaaaaa |
137 |
Q |
| |
|
||||||| |
|
|
| T |
4579260 |
gaaaaaa |
4579254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 31204781 - 31204926
Alignment:
| Q |
37 |
gtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaa |
136 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
31204781 |
gtaacaaaatattagcacgcagttaaaagaagagatga-aaaagaggaactgaactcacaatattt-acgtggaaacccctcaacaaataagaggaaaaa |
31204878 |
T |
|
| Q |
137 |
accacgg-ggcaagagtagagaactttcactaagtggaagaaattaca |
183 |
Q |
| |
|
| ||||| ||||| ||||||||||||||||||||||| | |||||||| |
|
|
| T |
31204879 |
atcacggaggcaatagtagagaactttcactaagtgggaaaaattaca |
31204926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 32 - 195
Target Start/End: Original strand, 5198664 - 5198827
Alignment:
| Q |
32 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198664 |
ccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagggg |
5198763 |
T |
|
| Q |
132 |
aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5198764 |
aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctctctct |
5198827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 825794 - 825632
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
825794 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaaccactcaacaaa |
825695 |
T |
|
| Q |
125 |
taaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
186 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
825694 |
taaggggaaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
825632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 25 - 186
Target Start/End: Complemental strand, 830450 - 830288
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830450 |
ttaggtaccagagtaacaaaatattatcacgcagttaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
830351 |
T |
|
| Q |
125 |
taaggggaa-aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacagga |
186 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
830350 |
taaggggaaaaaaaccacggggcaagagtggagaactttcactaagtggaagaaattacagga |
830288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 34 - 195
Target Start/End: Complemental strand, 15603183 - 15603022
Alignment:
| Q |
34 |
agagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa |
133 |
Q |
| |
|
||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15603183 |
agagtaagaaaatattatcacgcaattgaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaa |
15603084 |
T |
|
| Q |
134 |
aaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |
|
|
| T |
15603083 |
aaaaccacggggcaagagtagagaactttcactaagtagaagaaattacaagacctctctct |
15603022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 30396910 - 30397077
Alignment:
| Q |
22 |
ctattaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaac |
121 |
Q |
| |
|
||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
30396910 |
ctattgggtgccagagtagcaaaatattatcacgcagctaaaataagagacgagaaaagacgaactgaacacac-atatttt-cgttgaaacccctcaac |
30397007 |
T |
|
| Q |
122 |
aaataaggggaaaaaaccacggggcaagagtagagaac-tttcactaagtggaagaaattacaggacctc |
190 |
Q |
| |
|
||||||||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
30397008 |
aaataagggaaaaaaatcacagggcgagagtagagaacttttcactaagtggaagaaattacaagacctc |
30397077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 187
Target Start/End: Complemental strand, 28716070 - 28715915
Alignment:
| Q |
30 |
taccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataagg |
129 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
28716070 |
taccagagtaacaaaatattatcacacatttaaaataagagacgacaaaagaggaattgaacacacaata-tttacgtggaaacccctcattaaataagg |
28715972 |
T |
|
| Q |
130 |
ggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggac |
187 |
Q |
| |
|
|| ||||||||| | |||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
28715971 |
gg-aaaaaccacaagagaagaatagagaactttcacaaagtggaagaaattacaggac |
28715915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 36 - 183
Target Start/End: Original strand, 31592923 - 31593068
Alignment:
| Q |
36 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaa |
135 |
Q |
| |
|
||||||| ||||||||||| ||| || |||||||||||||||||||||||| |||| |||||| |||||||||||| | ||||| |||||| | |||| |
|
|
| T |
31592923 |
agtaacataatattatcacacagatagaataagagacgagaaaagaggaacataacatacaataatttacgtggaaatctctcaataaataa-gaaaaaa |
31593021 |
T |
|
| Q |
136 |
aaccacggggcaagagtagagaactttcactaagtggaagaaattaca |
183 |
Q |
| |
|
|||||| | |||||||||||||||||||||| | ||||||||||| |
|
|
| T |
31593022 |
aaccac-agataagagtagagaactttcactaaccgaaagaaattaca |
31593068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 13843865 - 13843959
Alignment:
| Q |
92 |
acacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacc |
188 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| | ||||| | || || |||| |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
13843865 |
acacaatattt-acgtggaaacccctcaacaaataaggag-aaaaattataggttaaaagtatagaattttcattaagtggaagaaattacaggacc |
13843959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 12175768 - 12175881
Alignment:
| Q |
43 |
aaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacg |
142 |
Q |
| |
|
||||||||||||||| ||||||||| ||| || |||| || || ||||||||||||||||| |||||||| ||||| |||||| ||||||||| | |
|
|
| T |
12175768 |
aaatattatcacgcaactaaaataaaagatgataaaaaagaaattgaacacacaatatttt-tgtggaaacatctcaataaataa-tggaaaaaacaatt |
12175865 |
T |
|
| Q |
143 |
gggcaagagtagagaa |
158 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
12175866 |
ggacaagagtagagaa |
12175881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 13840245 - 13840311
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacaca |
94 |
Q |
| |
|
||||||||| |||||||||||||||||| | || ||||| ||| |||||| ||||||| ||||||| |
|
|
| T |
13840245 |
ggtaccagaataacaaaatattatcacgtaattataataaaagatgagaaaggaggaaccgaacaca |
13840311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 38 - 87
Target Start/End: Original strand, 9358158 - 9358207
Alignment:
| Q |
38 |
taacaaaatattatcacgcagctaaaataagagacgagaaaagaggaact |
87 |
Q |
| |
|
|||| ||||||||| |||||||||||| || ||||||||||||| ||||| |
|
|
| T |
9358158 |
taaccaaatattattacgcagctaaaacaacagacgagaaaagaagaact |
9358207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 42117876 - 42117798
Alignment:
| Q |
84 |
aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttca |
164 |
Q |
| |
|
||||||||| ||||||||| |||| |||||| ||||| |||||||||| ||||||||| | ||| |||||| |||||||| |
|
|
| T |
42117876 |
aactgaacatacaatattt-acgtagaaacctctcaattaataagggga-aaaaccacgagacaaaagtagataactttca |
42117798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 153; Significance: 3e-81; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 16183636 - 16183804
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16183636 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
16183735 |
T |
|
| Q |
128 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga-aattacaggacctcactct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||| |
|
|
| T |
16183736 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattacaagacctctctct |
16183804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 8139969 - 8140136
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
8139969 |
ggtaccagagtaacaaaatattatcacacagctaaaataagagatgagaaaagagaaactgaacgcacaata-tttatgtggaaacccctcaacaaataa |
8140067 |
T |
|
| Q |
128 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactctt |
196 |
Q |
| |
|
||||| ||||||| |||| |||| |||| |||||||||| |||||||||||||| | |||||| ||||| |
|
|
| T |
8140068 |
ggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataagacctctctctt |
8140136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 28 - 190
Target Start/End: Complemental strand, 30235334 - 30235172
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
127 |
Q |
| |
|
|||||||||||| ||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
30235334 |
ggtaccagagtagcaaaatattattacacagctaaaataaaaaatgagaaaagaggaactgaacacacaata-tttacgtggaaacccctcaacgaataa |
30235236 |
T |
|
| Q |
128 |
gggg-aaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctc |
190 |
Q |
| |
|
|||| ||||||||||||| ||||||||| |||||||| ||| | ||||||||||||||||||| |
|
|
| T |
30235235 |
ggggaaaaaaaccacgggataagagtagaaaactttcaataactagaagaaattacaggacctc |
30235172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 28 - 195
Target Start/End: Original strand, 8138465 - 8138631
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
127 |
Q |
| |
|
|||| ||||||| |||| |||||||||||||||||||||||||||||||||||| |||| |||||||| || || | |||||||||||| |||||| || |
|
|
| T |
8138465 |
ggtagcagagtatcaaagtattatcacgcagctaaaataagagacgagaaaagaaaaacttaacacacagtaatt-atgtggaaaccccttaacaaacaa |
8138563 |
T |
|
| Q |
128 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctcactct |
195 |
Q |
| |
|
||||| ||||||||| ||||||| ||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
8138564 |
ggggagaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctct |
8138631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 36 - 181
Target Start/End: Original strand, 5102606 - 5102749
Alignment:
| Q |
36 |
agtaacaaaatattatcacgcagctaaaataagagacgagaaaa-gaggaactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaa |
134 |
Q |
| |
|
||||||||||||||||||| || ||||||||| ||| ||||||| |||| ||| || ||| ||||||| || || |||||| |||||||||||||||||| |
|
|
| T |
5102606 |
agtaacaaaatattatcactcaactaaaataaaagatgagaaaaagagggactaaatacataatattt-acatgaaaaccc-tcaacaaataaggggaaa |
5102703 |
T |
|
| Q |
135 |
aaaccacggggcaagagtagagaactttcactaagtggaagaaatta |
181 |
Q |
| |
|
|| ||| || ||||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
5102704 |
aa-ccatggagcaagagtagataacttttactaagtgggagaaatta |
5102749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 138
Target Start/End: Original strand, 36528420 - 36528529
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
127 |
Q |
| |
|
|||| |||||||||||| || || ||||| ||||||||||||| ||||| ||||||| ||||||||||||| |||||||||||||||||| || ||||| |
|
|
| T |
36528420 |
ggtatcagagtaacaaagtaaaattacgcaactaaaataagagatgagaatagaggaattgaacacacaata-tttacgtggaaacccctccacgaataa |
36528518 |
T |
|
| Q |
128 |
ggggaaaaaac |
138 |
Q |
| |
|
|| ||||||| |
|
|
| T |
36528519 |
ggaaaaaaaac |
36528529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 25 - 176
Target Start/End: Original strand, 27228 - 27379
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27228 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagagaaactgaacacacaatactttacgtggaaacccctcaacaaa |
27327 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27328 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
27379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 46191544 - 46191395
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
46191544 |
ttaggaaccagagtaacaaaatattatcatgcagctaaaataagagacgagaaaagaggaactgaacaca--atattttacgtggaaacccctcaacaaa |
46191447 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
46191446 |
taaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaaga |
46191395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 28 - 190
Target Start/End: Original strand, 30697120 - 30697281
Alignment:
| Q |
28 |
ggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaataa |
127 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
30697120 |
ggtactagagtaacaaaatattatcacgcagctaacataagagacgagaaaagaggaacttaacacaaaatattt-acgtggaaacccctcaacaaataa |
30697218 |
T |
|
| Q |
128 |
ggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattacaggacctc |
190 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30697219 |
ggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctc |
30697281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 25 - 176
Target Start/End: Complemental strand, 4130399 - 4130249
Alignment:
| Q |
25 |
ttaggtaccagagtaacaaaatattatcacgcagctaaaataagagacgagaaaagaggaactgaacacacaatattttacgtggaaacccctcaacaaa |
124 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
4130399 |
ttaggtacttgagtaacaaaatattatcacgcaactaaaataagtgacgagaaaagaggaactgaacacacaaaattt-acgtggaaatccctcaacaaa |
4130301 |
T |
|
| Q |
125 |
taaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
176 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4130300 |
taaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaaga |
4130249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University