View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1414_low_2 (Length: 364)

Name: NF1414_low_2
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1414_low_2
NF1414_low_2
[»] chr1 (11 HSPs)
chr1 (18-349)||(12017789-12018121)
chr1 (5-128)||(39574465-39574587)
chr1 (5-134)||(24515401-24515529)
chr1 (5-134)||(41140838-41140966)
chr1 (5-121)||(47858085-47858200)
chr1 (5-121)||(9765023-9765138)
chr1 (29-123)||(24523175-24523268)
chr1 (5-121)||(9758408-9758523)
chr1 (66-119)||(38278909-38278963)
chr1 (82-128)||(39580481-39580527)
chr1 (5-59)||(39581082-39581136)
[»] scaffold0045 (1 HSPs)
scaffold0045 (7-139)||(30042-30173)
[»] chr4 (15 HSPs)
chr4 (10-138)||(13393728-13393855)
chr4 (10-138)||(13396867-13396994)
chr4 (5-128)||(36048860-36048982)
chr4 (5-128)||(42567693-42567815)
chr4 (5-128)||(6262175-6262297)
chr4 (5-126)||(35905036-35905156)
chr4 (8-139)||(2228816-2228946)
chr4 (13-136)||(44160774-44160895)
chr4 (10-128)||(24423257-24423373)
chr4 (62-139)||(43444864-43444941)
chr4 (5-97)||(33366759-33366850)
chr4 (5-114)||(18891152-18891260)
chr4 (10-128)||(54256214-54256329)
chr4 (10-121)||(33361616-33361726)
chr4 (10-63)||(40169966-40170019)
[»] chr2 (17 HSPs)
chr2 (5-139)||(41826523-41826656)
chr2 (5-128)||(40113379-40113503)
chr2 (5-128)||(18341618-18341740)
chr2 (5-131)||(662748-662873)
chr2 (5-139)||(39190068-39190201)
chr2 (11-139)||(669972-670099)
chr2 (13-115)||(15144319-15144420)
chr2 (5-121)||(24138362-24138477)
chr2 (3-101)||(17527355-17527452)
chr2 (11-128)||(25336150-25336266)
chr2 (10-128)||(3949971-3950088)
chr2 (5-121)||(23888443-23888558)
chr2 (5-121)||(23892519-23892634)
chr2 (10-128)||(33425893-33426010)
chr2 (3-84)||(14661277-14661357)
chr2 (5-101)||(17530073-17530171)
chr2 (5-50)||(4840583-4840628)
[»] chr8 (9 HSPs)
chr8 (13-128)||(1262290-1262404)
chr8 (5-128)||(44626093-44626215)
chr8 (5-121)||(32038153-32038268)
chr8 (29-139)||(18324753-18324862)
chr8 (10-107)||(26005590-26005686)
chr8 (62-127)||(45272811-45272876)
chr8 (5-91)||(17497558-17497643)
chr8 (4-124)||(39517316-39517435)
chr8 (44-128)||(45266205-45266288)
[»] chr5 (6 HSPs)
chr5 (5-139)||(43097405-43097538)
chr5 (5-128)||(22729803-22729925)
chr5 (5-128)||(36950179-36950301)
chr5 (5-139)||(11339784-11339917)
chr5 (5-114)||(35941165-35941273)
chr5 (29-137)||(10491157-10491264)
[»] chr3 (16 HSPs)
chr3 (10-124)||(39039808-39039921)
chr3 (10-139)||(31112339-31112467)
chr3 (5-128)||(10626337-10626459)
chr3 (5-124)||(39032791-39032909)
chr3 (5-125)||(29960969-29961088)
chr3 (5-125)||(30010174-30010293)
chr3 (5-128)||(3469822-3469944)
chr3 (5-128)||(32285764-32285886)
chr3 (5-139)||(19240562-19240695)
chr3 (10-128)||(32280825-32280942)
chr3 (5-125)||(46611791-46611910)
chr3 (5-139)||(38445605-38445738)
chr3 (5-134)||(41272929-41273057)
chr3 (5-97)||(45677935-45678026)
chr3 (31-128)||(11172085-11172181)
chr3 (30-139)||(50158134-50158242)
[»] scaffold0062 (1 HSPs)
scaffold0062 (10-139)||(40195-40323)
[»] scaffold0502 (2 HSPs)
scaffold0502 (5-128)||(4207-4329)
scaffold0502 (5-128)||(8907-9029)
[»] chr7 (9 HSPs)
chr7 (5-128)||(267790-267912)
chr7 (10-128)||(26450971-26451084)
chr7 (24-128)||(278876-278979)
chr7 (5-121)||(48853577-48853692)
chr7 (10-121)||(32517095-32517205)
chr7 (66-128)||(40771208-40771270)
chr7 (11-129)||(5172839-5172956)
chr7 (10-139)||(29148766-29148894)
chr7 (10-128)||(40771692-40771809)
[»] chr6 (11 HSPs)
chr6 (5-128)||(32932361-32932483)
chr6 (5-128)||(18338083-18338205)
chr6 (5-128)||(23848616-23848738)
chr6 (5-128)||(7553463-7553584)
chr6 (5-121)||(9972751-9972866)
chr6 (5-102)||(22958130-22958226)
chr6 (5-102)||(23830166-23830262)
chr6 (73-128)||(15121637-15121692)
chr6 (5-84)||(19543475-19543553)
chr6 (5-80)||(27101520-27101594)
chr6 (5-80)||(27143342-27143416)
[»] scaffold0040 (2 HSPs)
scaffold0040 (5-121)||(67752-67867)
scaffold0040 (5-121)||(60276-60391)
[»] scaffold1634 (1 HSPs)
scaffold1634 (5-121)||(75-190)
[»] scaffold0027 (1 HSPs)
scaffold0027 (10-139)||(134600-134728)


Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 12017789 - 12018121
Alignment:
Q  18 attgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagat 117  Q
    ||||| |||| |||||||||||||||||||||| || ||||| |||||||||   |||||| |||||| |||||||||||||||||||||||||||||||    
T  12017789 attggacttagctaaatggtccaactcatcacggtccatttagaaaagaataattcaatcagacatattcatcaactaattagtgtttaacacaatagat 12017888  T
Q  118 cataatttataatataatattataactcaacttgtatctcatcacttcccc-cctttccctcatcggtttcgaatcaattatataaggtagaaaatacat 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12017889 cataatttataatataatattataactcaacttgtatctcatcacttccccccctttccctcatcggtttcgaatcaattacataaggtagaaaatacat 12017988  T
Q  217 ttttgtcaaagtaattaacgaataccaatagacacgaagacaaaggcaccaaacaatagaattgaaagaccagtgaaggtgaccaaaccagtttcagtct 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12017989 ttttgtcaaagtaattaacgaataccaatagacacgaagacaaaggcaccaaacaatagaattgaaagaccagtgaaggtgaccaaactagtttcagtct 12018088  T
Q  317 gatgtgccttcagcctcaagaaaccagccttct 349  Q
    ||||||||||||| |||||||||||||||||||    
T  12018089 gatgtgccttcagactcaagaaaccagccttct 12018121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 39574587 - 39574465
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||||||||||||||||| |||||||||||||||| |    
T  39574587 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaa-gaatagcccaatcacacatattcatcaactaattagtgct 39574489  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||||| |||||||||||    
T  39574488 taacacaatagaccataatttata 39574465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 5 - 134
Target Start/End: Original strand, 24515401 - 24515529
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||||||||||||||||| |||| |||||||||||||| ||||||| || ||||| ||| ||||||||| ||||||||||| |||||||||||||||| |    
T  24515401 gcagagacctctcattggacttagctaaatggtccaacccatcacggtccatttagaaa-gaatagcccgatcacacatattcatcaactaattagtgct 24515499  T
Q  105 taacacaatagatcataatttataatataa 134  Q
    |||||||||||| ||||||||||| |||||    
T  24515500 taacacaatagaccataatttatattataa 24515529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 41140966 - 41140838
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||||||||  |||||| |||||||||||||| ||||||| || ||||||||| |||||| ||||||| |||||| ||||||||||||| || |    
T  41140966 gcagggacctctcatcaggcttagctaaatggtccaacccatcacggtccatttaaaaa-gaatagaccaatcatacatattcatcaactaattaatgct 41140868  T
Q  105 taacacaatagatcataatttataatataa 134  Q
    ||||| |||||| ||||||||||| |||||    
T  41140867 taacataatagaccataatttatattataa 41140838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 47858200 - 47858085
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||| |||||| ||||| ||| ||||||| |||||| |||||| ||||||||||| ||||||    
T  47858200 gcagggacctctcattgggcttagctaaatggtccaacccattacgatcaatttagaaa-gaatagctcaatcatacatattcatcaactaatgagtgtt 47858102  T
Q  105 taacacaatagatcata 121  Q
    ||| |||||||| ||||    
T  47858101 taatacaatagaccata 47858085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 9765023 - 9765138
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || |||| | ||||||||||||||||| |||||| ||||||||||| |||| |    
T  9765023 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccattt-ataaagaatagcccaatcatacatattcatcaactaatgagtgct 9765121  T
Q  105 taacacaatagatcata 121  Q
    ||| ||| |||| ||||    
T  9765122 taatacagtagaccata 9765138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 29 - 123
Target Start/End: Original strand, 24523175 - 24523268
Alignment:
Q  29 ctaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataat 123  Q
    |||||||||||||| ||||||| || |||||||| ||||||| |||||||||||||| |||||| ||||||||| ||||||||||||| ||||||    
T  24523175 ctaaatggtccaacccatcacggtccatttaaaa-agaatagaccaatcacacatattcatcaattaattagtgcttaacacaatagaccataat 24523268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 9758408 - 9758523
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| ||||||| |||||| ||||||| || ||||| ||| |||||||||||||| |||||| ||||||||||| |||| |    
T  9758408 gcagtgacctctcattgggcttagctaaatgttccaacccatcacggtccatttagaaa-gaatagcccaatcatacatattcatcaactaatgagtgct 9758506  T
Q  105 taacacaatagatcata 121  Q
    ||| ||| |||| ||||    
T  9758507 taatacagtagaccata 9758523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 119
Target Start/End: Complemental strand, 38278963 - 38278909
Alignment:
Q  66 aatagcccaatcacacatatacatcaactaattagtgt-ttaacacaatagatca 119  Q
    ||||| |||||||||||||| ||||||||||||||||| ||||||||||| ||||    
T  38278963 aatagtccaatcacacatattcatcaactaattagtgtattaacacaataaatca 38278909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 39580527 - 39580481
Alignment:
Q  82 atatacatcaactaattagtgtttaacacaatagatcataatttata 128  Q
    |||| |||||||||||||||  ||||||||||||| |||||||||||    
T  39580527 atattcatcaactaattagtacttaacacaatagaccataatttata 39580481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 39581136 - 39581082
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctattta 59  Q
    |||| |||||||||||||||||| |||||| || |||||||||||| || |||||    
T  39581136 gcagggacctctcattgggcttagctaaattgttcaactcatcacggtccattta 39581082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 139
Target Start/End: Complemental strand, 30173 - 30042
Alignment:
Q  7 agagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgttta 106  Q
    |||||||||||||||| |||| ||||||||| |||  ||||||| || ||||| ||| ||||||| ||||||||||||| ||||||||||||||||||||    
T  30173 agagacctctcattggacttagctaaatggttcaatccatcacggtccatttagaaa-gaatagctcaatcacacatattcatcaactaattagtgttta 30075  T
Q  107 acacaatagatcataatttataatataatatta 139  Q
    |||||||||||||||||||||||||||||||||    
T  30074 acacaatagatcataatttataatataatatta 30042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 13393728 - 13393855
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||  |||||| ||||| ||||||||||||||||||||||     
T  13393728 gacctctcattgggcttagctaaatggtccaactcatcacggtccatttaaaa-agaatagcttaatcacgcatattcatcaactaattagtgtttaact 13393826  T
Q  110 caatagatcataatttataatataatatt 138  Q
    ||||||| ||||||||||| |||||||||    
T  13393827 caatagaccataatttatattataatatt 13393855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 13396867 - 13396994
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||  |||||| ||||| ||||||||||||||||||||||     
T  13396867 gacctctcattgggcttagctaaatggtccaactcatcacggtccatttaaaa-agaatagcttaatcacgcatattcatcaactaattagtgtttaact 13396965  T
Q  110 caatagatcataatttataatataatatt 138  Q
    ||||||| ||||||||||| |||||||||    
T  13396966 caatagaccataatttatattataatatt 13396994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 36048982 - 36048860
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||||||||||||||||| ||||| ||||||||||||    
T  36048982 gcagagacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaa-gaatagcccaatcacacatattcatcatctaattagtgtt 36048884  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||| ||| |||||||||||    
T  36048883 taacacaaaagaccataatttata 36048860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 42567693 - 42567815
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||||||||||| || |||||||| ||||||||||||||| |||||| ||||||||||||| || |    
T  42567693 gcagggacctctcattgggcttagctaaatggtccaactcatcacggtccatttaaaa-agaatagcccaatcagacatattcatcaactaattaatgct 42567791  T
Q  105 taacacaatagatcataatttata 128  Q
    |||| ||||||| |||||||||||    
T  42567792 taacgcaatagaccataatttata 42567815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 6262297 - 6262175
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||||||| ||||| ||| |||||| |||||||||||||| | |||| ||||||||| |    
T  6262297 gcagacacctctcattgggcttagctaaatggtccaacccatcacgatccatttagaaa-gaatagtccaatcacacatattcgtcaattaattagtgct 6262199  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||||| |||||||||||    
T  6262198 taacacaatagaccataatttata 6262175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 35905036 - 35905156
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    ||||||||||||||||||||||| ||||||||| |||| ||||||| || ||||| ||| ||||||  ||||||| ||||| |||||||||||||||| |    
T  35905036 gcagagacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaa-gaatagttcaatcacccatattcatcaactaattagtgct 35905134  T
Q  105 taacacaatagatcataattta 126  Q
    |||||||||||| |||||||||    
T  35905135 taacacaatagaccataattta 35905156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 8 - 139
Target Start/End: Complemental strand, 2228946 - 2228816
Alignment:
Q  8 gagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaa 107  Q
    ||||||||| ||||||||||  |||||||| |||| ||||||| || ||||| ||| ||||||| ||||||||||||| |||||||||||||||| | ||    
T  2228946 gagacctctaattgggcttagttaaatggttcaacccatcacggtccatttagaaa-gaatagctcaatcacacatattcatcaactaattagtgctcaa 2228848  T
Q  108 cacaatagatcataatttataatataatatta 139  Q
    | ||||||| ||||||||||| ||||||||||    
T  2228847 ctcaatagaccataatttatattataatatta 2228816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 44160774 - 44160895
Alignment:
Q  13 ctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaa 112  Q
    ||||| ||||||||| ||||||||| |||| || |||| || |||||||| |||||||| ||||||||||||| |||||||||||| ||  |||||||||    
T  44160774 ctctcgttgggcttagctaaatggttcaacccaccacg-tccatttaaaa-agaatagctcaatcacacatattcatcaactaatttgtacttaacacaa 44160871  T
Q  113 tagatcataatttataatataata 136  Q
    |||| |||||||||||||||||||    
T  44160872 tagaccataatttataatataata 44160895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 24423257 - 24423373
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    ||||||||||||||||||  ||||||||||||| ||| |||||| |||| | ||||||||| |||||||||||||| |||| | ||||||||| ||||||    
T  24423257 gacctctcattgggcttagttaaatggtccaacccattacgatccattt-agaaagaatagtccaatcacacatattcatc-attaattagtgcttaaca 24423354  T
Q  110 caatagatcataatttata 128  Q
    ||||| | |||||||||||    
T  24423355 caatataccataatttata 24423373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 139
Target Start/End: Complemental strand, 43444941 - 43444864
Alignment:
Q  62 aaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataatttataatataatatta 139  Q
    ||||||||| | |||| ||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  43444941 aaagaatagtctaatcgcacatattcatcaactaatgagtgtttaacacaatagaccataatttataatataatatta 43444864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 97
Target Start/End: Complemental strand, 33366850 - 33366759
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaat 97  Q
    |||| |||||||||||||||||| |||||||||||||| |||||||||| |||| | |||||||| |||||||| |||||| |||||||||||    
T  33366850 gcagggacctctcattgggcttagctaaatggtccaacccatcacgatccattt-agaaagaataacccaatcatacatattcatcaactaat 33366759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 18891152 - 18891260
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||||||||||||||||||||||||||| ||| ||||||  || | || ||||||||||| ||||||| |||||| ||||||||||| |||| |    
T  18891152 gcagggacctctcattgggcttaactaaatggtctaacccatcacagtcca-ttcaaaaagaatagtccaatcatacatattcatcaactaatgagtgct 18891250  T
Q  105 taacacaata 114  Q
    ||| ||||||    
T  18891251 taatacaata 18891260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 54256329 - 54256214
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||| ||||| ||||||||| ||||  |||||| || ||||| ||| ||||||  ||||||||  ||| |||||| ||||||||| ||||||    
T  54256329 gacctctcattgagcttagctaaatggttcaaccgatcacggtccatttagaaa-gaatagttcaatcaca--tattcatcaattaattagtgcttaaca 54256233  T
Q  110 caatagatcataatttata 128  Q
    |||||||||||||||||||    
T  54256232 caatagatcataatttata 54256214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 33361726 - 33361616
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    ||||||||||| | |||| |||||||||||||| ||||||| || |||| | |||||||| |||||||| ||||||  |||||||||| |||| |||| |    
T  33361726 gacctctcattagacttagctaaatggtccaacccatcacggtccattt-agaaagaataacccaatcatacatatttatcaactaatgagtgcttaata 33361628  T
Q  110 caatagatcata 121  Q
    |||||| |||||    
T  33361627 caataggtcata 33361616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 40170019 - 40169966
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaa 63  Q
    ||||| |||||| | ||||||||||||| |||||||||||| | ||||||||||    
T  40170019 gacctttcattgagattaactaaatggttcaactcatcacggtttatttaaaaa 40169966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 41826656 - 41826523
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || ||||||||| ||||||| |||||| |||||| |||||||||||||||| |    
T  41826656 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttaaaaa-gaatagctcaatcaaacatattcatcaactaattagtgct 41826558  T
Q  105 taacacaatagatcataatttataatataatatta 139  Q
    |||||||||||| ||||||||||| ||||| ||||    
T  41826557 taacacaatagaccataatttatactataacatta 41826523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 40113503 - 40113379
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaat--tagtg 102  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || |||| |||||||||||| ||||||||||||| |||||||||||  |||||    
T  40113503 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccattt-aaaaagaatagctcaatcacacatattcatcaactaattatagtg 40113405  T
Q  103 tttaacacaatagatcataatttata 128  Q
     ||||||||||||| |||||||||||    
T  40113404 cttaacacaatagaccataatttata 40113379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 18341618 - 18341740
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||| ||||| |||||||||||||| ||||||| || || || ||| ||||||| ||||||||||||| ||||| |||||||||| |    
T  18341618 gcagggacctctcattgagcttagctaaatggtccaacccatcacggtccatatagaaa-gaatagctcaatcacacatattcatcatctaattagtgct 18341716  T
Q  105 taacacaatagatcataatttata 128  Q
    ||||||||||||||||||||||||    
T  18341717 taacacaatagatcataatttata 18341740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 662873 - 662748
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||||||||||| |||| |||||||||||||| ||||||| || ||||| ||| ||||||| ||||||||||||| |||||| |||||||||||    
T  662873 gcagtgacctctcattggacttagctaaatggtccaacccatcacggtccatttagaaa-gaatagctcaatcacacatattcatcaagtaattagtgtt 662775  T
Q  105 taacacaatagatcataatttataata 131  Q
    |||||||||| | || |||||||||||    
T  662774 taacacaataaaccacaatttataata 662748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 39190201 - 39190068
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||||||||||| |||| |||||||||||||| ||||||| || |||||  ||  |||||||||||||| ||||| ||||||||||||| ||||    
T  39190201 gcagggacctctcattggacttagctaaatggtccaacccatcacggtccatttagtaac-aatagcccaatcactcatattcatcaactaattaatgtt 39190103  T
Q  105 taacacaatagatcataatttataatataatatta 139  Q
    |||||||||||| ||||||||||| ||||| ||||    
T  39190102 taacacaatagaccataatttatattataagatta 39190068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 670099 - 669972
Alignment:
Q  11 acctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacac 110  Q
    ||||||||||||||||| |||||||||| ||| ||||||| || ||||| ||| ||||||  ||||||||||||| |||||| ||||||||| |||||||    
T  670099 acctctcattgggcttagctaaatggtctaacccatcacggtccatttagaaa-gaatagatcaatcacacatattcatcaagtaattagtgcttaacac 670001  T
Q  111 aatagatcataatttataatataatatta 139  Q
    |||||| || ||||||||| |||||||||    
T  670000 aatagaccacaatttataaaataatatta 669972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 15144319 - 15144420
Alignment:
Q  13 ctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaa 112  Q
    |||||||||||||||  ||||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||| |||||||||||||||| |||||||||    
T  15144319 ctctcattgggcttagttaaatggtccaactcatcacggtccatttagaaa-gaatagcacaatcacacatattcatcaactaattagtgcttaacacaa 15144417  T
Q  113 tag 115  Q
    |||    
T  15144418 tag 15144420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 24138477 - 24138362
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||||||||||| ||||||||||||||||||| ||||||| || |||| |||||||||| | |||||| |||||| ||||||||||| |||| |    
T  24138477 gcagggacctctcattggacttaactaaatggtccaacccatcacggtccattt-aaaaagaataactcaatcatacatattcatcaactaatgagtgct 24138379  T
Q  105 taacacaatagatcata 121  Q
    ||| |||||||| ||||    
T  24138378 taatacaatagaccata 24138362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 17527355 - 17527452
Alignment:
Q  3 gagcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagt 101  Q
    |||||| |||||||||||||||||| |||||| ||||||| ||||||| || |||| | ||||||| |||||||||||||||| |||||||||||||||    
T  17527355 gagcagggacctctcattgggcttagctaaatagtccaacccatcacggtccattt-agaaagaatggcccaatcacacatattcatcaactaattagt 17527452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 11 - 128
Target Start/End: Complemental strand, 25336266 - 25336150
Alignment:
Q  11 acctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacac 110  Q
    |||||||||| | |||||||||||||| |||| ||||||| || ||||| ||| ||||||  ||||||||||||| |||||||||||||||| |||||||    
T  25336266 acctctcattagacttaactaaatggttcaacccatcacggtccatttagaaa-gaatagttcaatcacacatattcatcaactaattagtgcttaacac 25336168  T
Q  111 aatagatcataatttata 128  Q
    || ||| |||| ||||||    
T  25336167 aacagaccatagtttata 25336150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 3950088 - 3949971
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||||||||| |||||||||| ||| ||||||| || ||||| ||| ||||||  |||||||||||||  ||||| ||||||||| || |||    
T  3950088 gacctctcattgggcttagctaaatggtctaacccatcacggtccatttagaaa-gaatagttcaatcacacatatttatcaattaattagtgcttgaca 3949990  T
Q  110 caatagatcataatttata 128  Q
    |||||||  ||||||||||    
T  3949989 caatagactataatttata 3949971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 23888443 - 23888558
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||| ||| |||||||||||||| ||||||| || |||| | ||||||||| || |||| |||||| ||||||||||| |||| |    
T  23888443 gcagggacctctcattgggattagctaaatggtccaacccatcacggtccattt-agaaagaatagtccgatcatacatattcatcaactaatgagtgct 23888541  T
Q  105 taacacaatagatcata 121  Q
    ||| |||||||| ||||    
T  23888542 taatacaatagaccata 23888558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 23892519 - 23892634
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||| ||| |||||||||||||| ||||||| || |||| | ||||||||| || |||| |||||| ||||||||||| |||| |    
T  23892519 gcagggacctctcattgggattagctaaatggtccaacccatcacggtccattt-agaaagaatagtccgatcatacatattcatcaactaatgagtgct 23892617  T
Q  105 taacacaatagatcata 121  Q
    ||| |||||||| ||||    
T  23892618 taatacaatagaccata 23892634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 33426010 - 33425893
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||| ||||| |||||| ||| |||  |||| |||| ||||| |||  | || | |||| |||||||| ||||| |||||| ||||||||||    
T  33426010 gacctctcattgagcttagctaaatagtcaaacctatcatgatccatttagaaacta-taacacaattacacatattcatcatctaattcgtgtttaaca 33425912  T
Q  110 caatagatcataatttata 128  Q
    ||||| |||||||||||||    
T  33425911 caatacatcataatttata 33425893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 84
Target Start/End: Complemental strand, 14661357 - 14661277
Alignment:
Q  3 gagcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacata 84  Q
    |||||| |||||| ||||| ||||| |||||||||||||| ||||||| || |||| ||||||||||| ||||||| |||||    
T  14661357 gagcagggacctcccattgagcttagctaaatggtccaacccatcacggtccattt-aaaaagaatagtccaatcatacata 14661277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 101
Target Start/End: Original strand, 17530073 - 17530171
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcac---gatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagt 101  Q
    |||| |||||||||||||| ||| |||||||||||||| ||||||   | || |||| |||||||||  | ||||||||||||| |||||||||||||||    
T  17530073 gcagtgacctctcattgggtttagctaaatggtccaacccatcacggtggtccattt-aaaaagaatgacacaatcacacatattcatcaactaattagt 17530171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 4840583 - 4840628
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacg 50  Q
    |||| |||||||| ||| ||||| ||||||||||||||||||||||    
T  4840583 gcagggacctctctttgagcttagctaaatggtccaactcatcacg 4840628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 4e-35; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 1262404 - 1262290
Alignment:
Q  13 ctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaa 112  Q
    |||||||| |||||| |||||||||| ||||||||||| || ||||| ||| ||||||||||||||||||||| |||||||||||||||| |||||||||    
T  1262404 ctctcattaggcttagctaaatggtcaaactcatcacggtccatttagaaa-gaatagcccaatcacacatattcatcaactaattagtgcttaacacaa 1262306  T
Q  113 tagatcataatttata 128  Q
    ||||||||||||||||    
T  1262305 tagatcataatttata 1262290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 44626215 - 44626093
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||| |||| | |||||| |||||||||||||||| |    
T  44626215 gcagagacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaa-gaatagctcaattagacatattcatcaactaattagtgct 44626117  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||| | |||||||||||    
T  44626116 taacacaataaaccataatttata 44626093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 32038153 - 32038268
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || |||| | ||||||||| ||||||| |||||| ||||||||||| |||| |    
T  32038153 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccattt-agaaagaatagtccaatcatacatattcatcaactaatgagtgct 32038251  T
Q  105 taacacaatagatcata 121  Q
    ||| |||||||| ||||    
T  32038252 taatacaatagaccata 32038268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 18324862 - 18324753
Alignment:
Q  29 ctaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataatttata 128  Q
    ||||||| | |||| ||||||| || ||||| ||| ||||||  ||||| ||| ||| |||||||||||||||| ||||||||||||| |||||||||||    
T  18324862 ctaaatgattcaacccatcacggtccatttagaaa-gaatagttcaatcgcacttattcatcaactaattagtgcttaacacaatagaccataatttata 18324764  T
Q  129 atataatatta 139  Q
    |||||||||||    
T  18324763 atataatatta 18324753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 26005590 - 26005686
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaa 107  Q
    |||||||||||||||||| |||||||||||||| ||||||  || |||| |  |||||||||||||||| |||||| |||||| |||| |||| ||||    
T  26005590 gacctctcattgggcttagctaaatggtccaacccatcacagtccattt-agtaagaatagcccaatcatacatattcatcaattaatgagtgcttaa 26005686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 127
Target Start/End: Original strand, 45272811 - 45272876
Alignment:
Q  62 aaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataatttat 127  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |||| |||||    
T  45272811 aaagaatagtccaattacacatattcatcaactaattagtgtttaacacgatagaccatagtttat 45272876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 5 - 91
Target Start/End: Original strand, 17497558 - 17497643
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatca 91  Q
    |||| |||||||||||||| ||  |||||||||||||| ||||||| || |||| | |||||||| ||||||||||||||| |||||    
T  17497558 gcagggacctctcattgggtttggctaaatggtccaacccatcacggtccattt-agaaagaataacccaatcacacatattcatca 17497643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 124
Target Start/End: Complemental strand, 39517435 - 39517316
Alignment:
Q  4 agcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgt 103  Q
    ||||||||||||||||||  || | |||||| ||| ||| ||| ||  || |||||| ||  |||||  ||||||||||||| |||| |||||||||||     
T  39517435 agcagagacctctcattgaactcagctaaattgtcaaacccattacagtccatttaataac-aatagttcaatcacacatattcatcgactaattagtgc 39517337  T
Q  104 ttaacacaatagatcataatt 124  Q
    ||||||||||| |||||||||    
T  39517336 ttaacacaatatatcataatt 39517316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 45266205 - 45266288
Alignment:
Q  44 catcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataatttata 128  Q
    |||||||||| ||||| ||| ||||||||||||||| |||||  ||||||||||||||| |||| |||||| |  ||||||||||    
T  45266205 catcacgatccatttagaaa-gaatagcccaatcacccatatttatcaactaattagtgcttaatacaatatactataatttata 45266288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 75; Significance: 2e-34; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 43097538 - 43097405
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||| |||||||||||| |||||||||||||||||||||| |  ||||||||| |||||| |||||||||||||| |||||||||| ||||| |    
T  43097538 gcagggacctttcattgggcttagctaaatggtccaactcatcacggttcatttaaaaa-gaatagtccaatcacacatattcatcaactaactagtgct 43097440  T
Q  105 taacacaatagatcataatttataatataatatta 139  Q
    |||| ||||||| ||||||||||| ||||||||||    
T  43097439 taactcaatagaccataatttatattataatatta 43097405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 22729925 - 22729803
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||||||||||| |||| |||||||||||||| ||||||  || ||||| ||| ||||||||| ||||||||||| |||||||||||||||| |    
T  22729925 gcagggacctctcattggacttagctaaatggtccaacccatcacagtccatttagaaa-gaatagcccgatcacacatattcatcaactaattagtgct 22729827  T
Q  105 taacacaatagatcataatttata 128  Q
    ||||||||||||||||||||||||    
T  22729826 taacacaatagatcataatttata 22729803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 36950179 - 36950301
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||| ||||||||||||| |||||||||||||||| |    
T  36950179 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttataaa-gaatagctcaatcacacatattcatcaactaattagtgct 36950277  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||| | |||||||||||    
T  36950278 taacacaataaaccataatttata 36950301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 11339917 - 11339784
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||| ||| |||||||||||||| ||||||| || ||||| ||| |||||| ||||||||| |||| ||| ||||||| |||| |    
T  11339917 gcagggacctctcattgggtttagctaaatggtccaacccatcacggtccatttagaaa-gaatagtccaatcacatatattcattaactaatcagtgct 11339819  T
Q  105 taacacaatagatcataatttataatataatatta 139  Q
    ||| |||||||| ||||||||||| ||||| ||||    
T  11339818 taatacaatagaccataatttatattataacatta 11339784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 114
Target Start/End: Original strand, 35941165 - 35941273
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| | |||||||||||| ||||||  || ||||| ||| |||||| |||||||||||||| |||||||||||||||| |    
T  35941165 gcagggacctctcattgggcttagcgaaatggtccaacccatcacagtccatttagaaa-gaatagtccaatcacacatattcatcaactaattagtgct 35941263  T
Q  105 taacacaata 114  Q
    ||||||||||    
T  35941264 taacacaata 35941273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 10491264 - 10491157
Alignment:
Q  29 ctaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataatttata 128  Q
    ||||| |||||||| ||||||| || |||||  || ||||||||||||||| ||||| ||| ||||||||||||  |||||||||||| |||||||| ||    
T  10491264 ctaaacggtccaacccatcacggtccatttagtaa-gaatagcccaatcactcatattcattaactaattagtgcctaacacaatagaccataatttgta 10491166  T
Q  129 atataatat 137  Q
     ||||||||    
T  10491165 ttataatat 10491157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 39039808 - 39039921
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||    
T  39039808 gacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaa-gaatagcccaatcacacatattcatcaactaattagtgtttaaca 39039906  T
Q  110 caatagatcataatt 124  Q
     |||||| |||||||    
T  39039907 gaatagaccataatt 39039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 31112467 - 31112339
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||||||||||||| ||| |||||||||||||||  ||||||    
T  31112467 gacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaa-gaatagcccaatcacacttattcatcaactaattagtacttaaca 31112369  T
Q  110 caatagatcataatttataatataatatta 139  Q
    ||||||| ||||||||||| ||| ||||||    
T  31112368 caatagaccataatttatattatgatatta 31112339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 10626337 - 10626459
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||| ||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||||||||||||||||| |||| ||||||||||| |    
T  10626337 gcagggaccactcattgggcttagctaaatggtccaacccatcacggtccatttagaaa-gaatagcccaatcacacatatccatctactaattagtgct 10626435  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||||| |||||||||||    
T  10626436 taacacaatagaccataatttata 10626459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 39032791 - 39032909
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| ||||||||||||||||||||| |||||||||||||||| |    
T  39032791 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaa-gaatagcccaatcacacatattcatcaactaattagtgct 39032889  T
Q  105 taacacaatagatcataatt 124  Q
    ||||| |||||| |||||||    
T  39032890 taacagaatagaccataatt 39032909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 29960969 - 29961088
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||| || ||||| ||| |||||| |||||||||||||| ||||||||||||| || |    
T  29960969 gcagagacctctcattgggtttagctaaatggtccaacccatcacggtccatttagaaa-gaatagtccaatcacacatattcatcaactaattaatgct 29961067  T
Q  105 taacacaatagatcataattt 125  Q
    |||||||||||| ||||||||    
T  29961068 taacacaatagaccataattt 29961088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 30010174 - 30010293
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    ||||||||||||||||||| ||| |||||||||||||| ||||||| || ||||| ||| |||||| |||||||||||||| ||||||||||||| || |    
T  30010174 gcagagacctctcattgggtttagctaaatggtccaacccatcacggtccatttagaaa-gaatagtccaatcacacatattcatcaactaattaatgct 30010272  T
Q  105 taacacaatagatcataattt 125  Q
    |||||||||||| ||||||||    
T  30010273 taacacaatagaccataattt 30010293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 3469944 - 3469822
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||  |||||||||||||  ||||||| || ||||| ||| ||||||||||||||||||||| |||||| ||||||||| |    
T  3469944 gcagggacctctcattgggcttcgctaaatggtccaaaccatcacggtccatttagaaa-gaatagcccaatcacacatattcatcaattaattagtgct 3469846  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||||| |||||||||||    
T  3469845 taacacaatagaccataatttata 3469822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 32285764 - 32285886
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||| || |||||| ||| ||||   ||||||||||||| ||||||||||||||||||    
T  32285764 gcagagacctctcattaggcttagctaaatggtccaacccatcacggtccatttaagaaa-aataattcaatcacacatattcatcaactaattagtgtt 32285862  T
Q  105 taacacaatagatcataatttata 128  Q
    ||||| |||| | |||||||||||    
T  32285863 taacagaataaaccataatttata 32285886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 19240562 - 19240695
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||||||||| |||||| |||||||||||||  ||||||| || ||||| ||| ||||| | ||||||||||||| |||||||||||||||| |    
T  19240562 gcagggacctctcattaggcttagctaaatggtccaatccatcacggtccatttagaaa-gaatatctcaatcacacatattcatcaactaattagtgct 19240660  T
Q  105 taacacaatagatcataatttataatataatatta 139  Q
    |||||||||| | ||||||||||| ||||| ||||    
T  19240661 taacacaatataccataatttatattataacatta 19240695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 32280825 - 32280942
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| |||||| | |||||||||| | |||||||||||||||| |||| |    
T  32280825 gacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaa-gaatagtcaaatcacacatgttcatcaactaattagtgcttaata 32280923  T
Q  110 caatagatcataatttata 128  Q
     |||||| |||||||||||    
T  32280924 gaatagaccataatttata 32280942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 125
Target Start/End: Complemental strand, 46611910 - 46611791
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||||| |||||||||| ||||||||||||||||||||||||| || | | |||||||||  |||||||||||||  |||| |||||||||| |    
T  46611910 gcagtgacctcttattgggcttagctaaatggtccaactcatcacgatccatct-agaaagaatagttcaatcacacatatttatcatctaattagtgct 46611812  T
Q  105 taacacaatagatcataattt 125  Q
    ||||||||||||  |||||||    
T  46611811 taacacaatagactataattt 46611791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 5 - 139
Target Start/End: Complemental strand, 38445738 - 38445605
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||||||||||| ||||| |||| ||||||||| |||| ||||||| |  ||||| |||| |||||  ||||||||||||| ||||||||||||| || |    
T  38445738 gcagagacctctaattggacttagctaaatggttcaacccatcacggttcatttagaaaa-aatagttcaatcacacatattcatcaactaattaatgct 38445640  T
Q  105 taacacaatagatcataatttataatataatatta 139  Q
    ||||  |||||| ||||||||||| ||| ||||||    
T  38445639 taactgaatagaccataatttatattatgatatta 38445605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 5 - 134
Target Start/End: Complemental strand, 41273057 - 41272929
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||   |||| ||||||||| ||||  |||| | || ||||| ||| ||||||| |||||| |||||| |||||||||||||||| |    
T  41273057 gcagggacctctcattaaacttagctaaatggttcaacctatcatggtccatttagaaa-gaatagcacaatcatacatattcatcaactaattagtgct 41272959  T
Q  105 taacacaatagatcataatttataatataa 134  Q
    |||||||||||| ||||||||||| |||||    
T  41272958 taacacaatagaccataatttatattataa 41272929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 45677935 - 45678026
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaat 97  Q
    |||| ||||||||||||||||||  ||||||||||||| ||||||| ||||||| |||||||||||  |||||| |||| | |||||||||||    
T  45677935 gcagggacctctcattgggcttaggtaaatggtccaacccatcacggtctattt-aaaaagaatagttcaatcatacattttcatcaactaat 45678026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 31 - 128
Target Start/End: Original strand, 11172085 - 11172181
Alignment:
Q  31 aaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataatttata 128  Q
    ||||| |||||| ||||||| || ||||| ||| ||||||  ||||||||||||| |||||||||||||||| ||| || |||||| |||||||||||    
T  11172085 aaatgttccaacccatcacggtccatttagaaa-gaatagttcaatcacacatattcatcaactaattagtgcttatcagaatagaccataatttata 11172181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 50158242 - 50158134
Alignment:
Q  30 taaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataatttataa 129  Q
    ||||||||||||| ||||||| || ||||| |||  |||||| |||||| |||||| ||||||||||| |||| |||| ||| |||| |||| | || |     
T  50158242 taaatggtccaacccatcacggtccatttagaaat-aatagcacaatcatacatattcatcaactaatgagtgcttaatacagtagaccatattataaat 50158144  T
Q  130 tataatatta 139  Q
    ||||||||||    
T  50158143 tataatatta 50158134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 40195 - 40323
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||| ||||||| ||||||||||||||||| |||| || ||||||||| ||||| | ||||||||||||| |||||||||||||||| ||| ||    
T  40195 gacctctcatcgggcttagctaaatggtccaactcagcacggtccatttaaaaa-gaataactcaatcacacatattcatcaactaattagtgcttagca 40293  T
Q  110 caatagatcataatttataatataatatta 139  Q
    || |||| ||||||||||||||||||||||    
T  40294 cagtagaccataatttataatataatatta 40323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 4329 - 4207
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| ||||||||| |||| ||||||| || ||||| ||| |||||| |||||||||||||| ||| ||||||||||||||    
T  4329 gcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaa-gaatagtccaatcacacatattcataaactaattagtgtt 4231  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||||| |||||||||||    
T  4230 taacacaatagaccataatttata 4207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 9029 - 8907
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| ||||||||| |||| ||||||| || ||||| ||| ||||||  ||||||||||||| ||| |||||||||||| |    
T  9029 gcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaa-gaatagatcaatcacacatattcataaactaattagtgct 8931  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||||| |||||||||||    
T  8930 taacacaatagaccataatttata 8907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 267790 - 267912
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||| ||| ||||||| || ||||| ||| |||||||||||||| |||||| |||||||||||||||| |    
T  267790 gcagggacctctcattgggcttagctaaatggtcaaacccatcacggtccatttagaaa-gaatagcccaatcagacatattcatcaactaattagtgct 267888  T
Q  105 taacacaatagatcataatttata 128  Q
    |||| ||||||| |||||||||||    
T  267889 taacgcaatagaccataatttata 267912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 26450971 - 26451084
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||||||||| |||||||||||||| ||||||  || |||||     |||||||||||||||| |||| ||||| |||||||||| ||||||    
T  26450971 gacctctcattgggcttagctaaatggtccaacccatcacagtccattta-----gaatagcccaatcacaaatattcatcatctaattagtgcttaaca 26451065  T
Q  110 caatagatcataatttata 128  Q
    ||||||| |||||||||||    
T  26451066 caatagaccataatttata 26451084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 278876 - 278979
Alignment:
Q  24 cttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataat 123  Q
    |||| |||||||||||||| ||||||| || ||||| ||| |||||||||||||| |||||| |||||||||||||||| ||||| ||||||| ||||||    
T  278876 cttagctaaatggtccaacccatcacggtccatttagaaa-gaatagcccaatcagacatattcatcaactaattagtgcttaacgcaatagaccataat 278974  T
Q  124 ttata 128  Q
    |||||    
T  278975 ttata 278979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 48853692 - 48853577
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || |||| | ||||||||| ||||||| |||||| ||||||||||| |||| |    
T  48853692 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccattt-agaaagaatagtccaatcatacatattcatcaactaatgagtgct 48853594  T
Q  105 taacacaatagatcata 121  Q
    ||| |||||||| ||||    
T  48853593 taatacaatagaccata 48853577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 10 - 121
Target Start/End: Complemental strand, 32517205 - 32517095
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||||||||| |||||||||||||| ||||||| || |||||  || |||||||||||||| |||||| ||||||||||| |||| |||| |    
T  32517205 gacctctcattgggcttagctaaatggtccaacccatcacggtcaatttagtaa-gaatagcccaatcatacatattcatcaactaataagtgcttaata 32517107  T
Q  110 caatagatcata 121  Q
    ||||||| ||||    
T  32517106 caatagaccata 32517095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 128
Target Start/End: Complemental strand, 40771270 - 40771208
Alignment:
Q  66 aatagcccaatcacacatatacatcaactaattagtgtttaacacaatagatcataatttata 128  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  40771270 aatagcccaatcacacatattcatcaactaattagtgtttaacacaatagaccataatttata 40771208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 129
Target Start/End: Complemental strand, 5172956 - 5172839
Alignment:
Q  11 acctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaacac 110  Q
    ||||||||||| |||||  ||||| || |||| ||||| | || ||||| |||  ||||  ||||||||| |||| |||||||||||||||| |||| ||    
T  5172956 acctctcattgtgcttaggtaaatagttcaacccatcatggtcaatttagaaac-aataatccaatcacatatattcatcaactaattagtgcttaatac 5172858  T
Q  111 aatagatcataatttataa 129  Q
    |||||||||||||||||||    
T  5172857 aatagatcataatttataa 5172839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 29148766 - 29148894
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    ||||||||||||| |||| ||||||| ||||||  |||||  || ||||| ||| |||||  | || || |||||| ||||||||||||||||||||| |    
T  29148766 gacctctcattggacttagctaaatgttccaaccaatcaccgtccatttagaaa-gaataatcgaaacatacatattcatcaactaattagtgtttaata 29148864  T
Q  110 caatagatcataatttataatataatatta 139  Q
    | |||||  ||||||||| |||||||||||    
T  29148865 ccatagactataatttattatataatatta 29148894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 40771692 - 40771809
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||| ||||| |||||||   ||| |||||||| || ||||| |||  |||||| ||||||||||||| ||  | |||||||||| | ||||    
T  40771692 gacctctcattgagcttagctaaatgagtcaattcatcacggtccatttagaaac-aatagctcaatcacacatattcactagctaattagtgctcaaca 40771790  T
Q  110 caatagatcataatttata 128  Q
    ||||||| |||||||||||    
T  40771791 caatagaccataatttata 40771809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 32932361 - 32932483
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    ||||||| ||||||||||||| |||||||||||||||| ||||||   | |||| | |||||||||| ||||||||||||| |||||| |||||||||||    
T  32932361 gcagagatctctcattgggctcaactaaatggtccaacacatcacagcccattt-agaaagaatagctcaatcacacatattcatcaattaattagtgtt 32932459  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||||| |||||||||||    
T  32932460 taacacaatagaccataatttata 32932483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 18338205 - 18338083
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| ||||||||| |||| ||||||| || ||||| ||| ||||||  ||||||||||||| ||| |||||||||||| |    
T  18338205 gcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaa-gaatagatcaatcacacatattcataaactaattagtgct 18338107  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||||||||| |||||||||||    
T  18338106 taacacaatagaccataatttata 18338083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 23848616 - 23848738
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| ||||||||| |||| ||||||| || ||||| ||| |||||| |||||||||||||| |||||| ||||||||| |    
T  23848616 gcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagaaa-gaatagtccaatcacacatattcatcaattaattagtgct 23848714  T
Q  105 taacacaatagatcataatttata 128  Q
    | |||||||||| |||||||||||    
T  23848715 ttacacaatagaccataatttata 23848738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 7553463 - 7553584
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||| ||||| |||| ||| |||||||||||||| |||||||||| |||| |||||||||||||||||| ||||||| |||| | |||||| || |    
T  7553463 gcagggacttctcactgggtttagctaaatggtccaacccatcacgatccattt-aaaaagaatagcccaatcgcacatattcatc-attaattaatgct 7553560  T
Q  105 taacacaatagatcataatttata 128  Q
    |||||| ||||| |||||||||||    
T  7553561 taacaccatagaccataatttata 7553584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 9972866 - 9972751
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| ||||||||| |||| ||||||| || |||||   | |||||||||||||| |||||| ||||||||||| | ||||    
T  9972866 gcagggacctctcattgggcttagctaaatggttcaacccatcacggtccatttagtta-gaatagcccaatcatacatattcatcaactaatgaatgtt 9972768  T
Q  105 taacacaatagatcata 121  Q
    ||| |||||||| ||||    
T  9972767 taatacaatagaccata 9972751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 22958130 - 22958226
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtg 102  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||||| || |||| |||||||||| || |||||||||| | |||||| |||||||||    
T  22958130 gcagggacttctcattgggcttaactaaatggttcaacccatcacggtccattt-aaaaagaataacctaatcacacattttcatcaattaattagtg 22958226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 5 - 102
Target Start/End: Complemental strand, 23830262 - 23830166
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtg 102  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||||| || |||| |||||||||| || |||||||||| | |||||| |||||||||    
T  23830262 gcagggacttctcattgggcttaactaaatggttcaacccatcacggtccattt-aaaaagaataacctaatcacacattttcatcaattaattagtg 23830166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 128
Target Start/End: Original strand, 15121637 - 15121692
Alignment:
Q  73 caatcacacatatacatcaactaattagtgtttaacacaatagatcataatttata 128  Q
    ||||||||||||| |||||||||||||||  ||||||||||| | |||||||||||    
T  15121637 caatcacacatattcatcaactaattagttattaacacaatataccataatttata 15121692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 19543553 - 19543475
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacata 84  Q
    |||| ||||||||||| ||||||  ||||||||||||| |||||||  | |||| |||||||||| || |||||||||||    
T  19543553 gcagggacctctcattcggcttagttaaatggtccaacccatcacggcccattt-aaaaagaataacctaatcacacata 19543475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 27101594 - 27101520
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcaca 80  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||||| || |||| | ||||||||| | |||||||    
T  27101594 gcagggacatctcattgggcttaactaaatggttcaacccatcacggtccattt-agaaagaatagtcaaatcaca 27101520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 27143416 - 27143342
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcaca 80  Q
    |||| ||| |||||||||||||||||||||||| |||| ||||||| || |||| | ||||||||| | |||||||    
T  27143416 gcagggacatctcattgggcttaactaaatggttcaacccatcacggtccattt-agaaagaatagtcaaatcaca 27143342  T

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Target: scaffold0040 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 67867 - 67752
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || ||||| ||| |||||||||||||| |||||| ||||||||||| ||||||    
T  67867 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagaaa-gaatagcccaatcatacatattcatcaactaatgagtgtt 67769  T
Q  105 taacacaatagatcata 121  Q
     || |||||||| ||||    
T  67768 caatacaatagaccata 67752  T

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Target: scaffold0040; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 60391 - 60276
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| |||||||||||||||||| |||||||||||||| ||||||| || |||||  || |||||||||||||| |||||| ||||||||||| ||||||    
T  60391 gcagggacctctcattgggcttagctaaatggtccaacccatcacggtccatttagtaa-gaatagcccaatcatacatattcatcaactaatgagtgtt 60293  T
Q  105 taacacaatagatcata 121  Q
     || |||||||| ||||    
T  60292 caatacaatagaccata 60276  T

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Target: scaffold1634 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold1634
Description:

Target: scaffold1634; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 75 - 190
Alignment:
Q  5 gcagagacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtt 104  Q
    |||| ||||||||||| |||||| |||||||||||||| |||||||||| |||| | ||||||||| ||||||| |||||| ||||||||||| |||| |    
T  75 gcagggacctctcatttggcttagctaaatggtccaacccatcacgatccattt-agaaagaatagtccaatcatacatattcatcaactaatgagtgct 173  T
Q  105 taacacaatagatcata 121  Q
    ||| |||||||| ||||    
T  174 taatacaatagaccata 190  T

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Target: scaffold0027 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 134600 - 134728
Alignment:
Q  10 gacctctcattgggcttaactaaatggtccaactcatcacgatctatttaaaaaagaatagcccaatcacacatatacatcaactaattagtgtttaaca 109  Q
    |||||||||||||||||| ||||||||| |||| ||||||| || |||||  ||  ||||| |||||||| | ||| ||||||||||| |||||||||||    
T  134600 gacctctcattgggcttatctaaatggttcaacccatcacggtccatttagtaac-aatagtccaatcactcgtattcatcaactaatcagtgtttaaca 134698  T
Q  110 caatagatcataatttataatataatatta 139  Q
     |||| | ||||||||||| ||||| ||||    
T  134699 gaatataccataatttatattataagatta 134728  T

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