View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1414_low_3 (Length: 323)
Name: NF1414_low_3
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1414_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 6807238 - 6807535
Alignment:
| Q |
10 |
ccacagagcaataatgacatgttttggttcaacagaatcacctttgttttcaccttctttatttgaaagaacaccaagtgaggttgttgctaaccaatct |
109 |
Q |
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| T |
6807238 |
ccacaaagcaataatgacatgttttggttcaacagaatcacctttgttttcaccttctttatttgaaagaacaccaagtgaggttgttgctaaccaatct |
6807337 |
T |
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| Q |
110 |
gcaaacaagtaggcagaccatagtatgattctgagccaaatgcatgtccagaactttctcttagttccaaacagtatgagaatgaattggatgttgaggc |
209 |
Q |
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| T |
6807338 |
gcaaacaagtaggcagaccatagtatgattctgagccagatgcatgtccagaactttctcttagttccaaacagtatgagaatgaattggatgttgaggc |
6807437 |
T |
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| Q |
210 |
tgaacacaaccattaaacgaaggttccaattatccacaaaattttgaaaactttctgaaaaaatctgcatcatgcctcttctctgtgtgagagctaaa |
307 |
Q |
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| T |
6807438 |
tgaacacaaccattaaacgaaggttccaattatccacaaagttttgaaaactttctgaaaaaatctgcatcatgcctcttctctgtgtgagagctaaa |
6807535 |
T |
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Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 7329423 - 7329720
Alignment:
| Q |
10 |
ccacagagcaataatgacatgttttggttcaacagaatcacctttgttttcaccttctttatttgaaagaacaccaagtgaggttgttgctaaccaatct |
109 |
Q |
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||||| ||| |||||||||| |||||||| ||| ||||| |||||||||| || |||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
7329423 |
ccacaaagcgataatgacatactttggttccacaaaatcatctttgttttctccctctttacttgaaagaacaccaagtgaggttgttgcaaaccaatct |
7329522 |
T |
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| Q |
110 |
gcaaacaagtaggcagaccatagtatgattctgagccaaatgcatgtccagaactttctcttagttccaaacagtatgagaatgaattggatgttgaggc |
209 |
Q |
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| T |
7329523 |
gcaaacaaataagcagaccatagtatgattctaagatagatgcttgtgtagaactttctcttgtttccaaacaataagagaatgcattggatgccgaggc |
7329622 |
T |
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| Q |
210 |
tgaacacaaccattaaacgaaggttccaatt-atccacaaaattttgaaaactttctgaaaaaatctgcatcatgcctcttctctgtgtgagagctaaa |
307 |
Q |
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| T |
7329623 |
ttaacacaaccataaaacgaagattccaattgctcca-aaatttctgtaaactttctggaaaaatatgcatcatgcctctcctctgtgtcaaagctaaa |
7329720 |
T |
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