View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1414_low_4 (Length: 310)
Name: NF1414_low_4
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1414_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 21579837 - 21579553
Alignment:
| Q |
1 |
tagagaaatgtattgaaactattgttcttcttaagttacctaagattgagaatactgcatatgtcccacttgttggaaatgctaaggtggttctttctga |
100 |
Q |
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| T |
21579837 |
tagagaaatgtattgaaactattgttcttcttaagttacctaagattgagaatactgcatatgtcccacttgttggaaatgctaaggtgactctgtctga |
21579738 |
T |
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| Q |
101 |
tatcatgattaaggatgttcaagttaatgattcttcagtgattattagagagagtggtatagttgtagttttttctggtgctactgttgatttgagtatg |
200 |
Q |
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| T |
21579737 |
tatcatgattaaggatgttcaagttaatgattcttcagtgattattagagagagtggtatagttgtggttttttctgctgctactgttgatttgagtatg |
21579638 |
T |
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| Q |
201 |
aagtggaaatatactgtaagctcttggttgattccttttgggatttctggtagtgggactgcttcaattaaggtatgaatttgaa |
285 |
Q |
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| T |
21579637 |
aagtggaagtatactgtgagctcttggttgattccttttgggatttctggtagtgggactgcttcaattaaggtatgaagttgaa |
21579553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 21576220 - 21575942
Alignment:
| Q |
1 |
tagagaaatgtattgaaactattgttcttcttaagttacctaagattgagaatactgcatatgtcccacttgttggaaatgctaaggtggttctttctga |
100 |
Q |
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|||||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||| |
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| T |
21576220 |
tagagaaaggtattgaaactattgtttttgttaagttacctaagattgagaatactgcatatgttccacttgttggaaatgctaaggtgactctgtctga |
21576121 |
T |
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| Q |
101 |
tatcatgattaaggatgttcaagttaatgattcttcagtgattattagagagagtggtatagttgtagttttttctggtgctactgttgatttgagtatg |
200 |
Q |
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| T |
21576120 |
tatcatgattaaggatgttcaagttaatacttcgaatattatgattggagagagtggtattgttgtagttgttactggtgctattgttgatttgagtatg |
21576021 |
T |
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| Q |
201 |
aagtggaaatatactgtaagctcttggttgattccttttgggatttctggtagtgggactgcttcaattaaggtatgaa |
279 |
Q |
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|||||||| |||||||| || ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21576020 |
aagtggaagtatactgtcagttcttggttgcttccttttgggatttctgatagtgggactgcttcaattaaggtatgaa |
21575942 |
T |
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