View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1414_low_6 (Length: 288)

Name: NF1414_low_6
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1414_low_6
NF1414_low_6
[»] chr7 (7 HSPs)
chr7 (48-272)||(37580906-37581134)
chr7 (133-258)||(37480685-37480821)
chr7 (133-187)||(6778701-6778755)
chr7 (133-186)||(6774415-6774468)
chr7 (200-258)||(6778619-6778677)
chr7 (133-187)||(37476163-37476217)
chr7 (200-258)||(37476241-37476299)
[»] chr5 (1 HSPs)
chr5 (131-187)||(8992555-8992611)
[»] chr1 (1 HSPs)
chr1 (131-186)||(45071637-45071692)
[»] chr4 (3 HSPs)
chr4 (141-178)||(52791814-52791851)
chr4 (203-272)||(55118903-55118972)
chr4 (139-179)||(11160852-11160892)
[»] chr3 (1 HSPs)
chr3 (131-187)||(50915239-50915295)


Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 48 - 272
Target Start/End: Complemental strand, 37581134 - 37580906
Alignment:
Q  48 taaccacaattattgattcc-atgggttttccccgggacgagctgcctcctcttcattcggctttggactgaagttattctgactgttaaatgtcttgcg 146  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  37581134 taaccacaattattgattcccatgggttttccccgggacgagctgcctcctcttcgttcggctttggactgaagttattctgactgttaaacgtcttgcg 37581035  T
Q  147 aatctcctccggcgtcttccccttgatcatgtccgccacaggtaag---caacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaag 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37581034 aatctcctccggcgtcttccccttgatcatgtccgccacaggtaagcttcaacaggctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaag 37580935  T
Q  244 catagcctgatcaacatgcttcatgaatt 272  Q
    |||||||||||||||||||||||||||||    
T  37580934 catagcctgatcaacatgcttcatgaatt 37580906  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 37480685 - 37480821
Alignment:
Q  133 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgcca--------caggtaag---caacaggctcttgatgttcaagtaatttg 221  Q
    ||||| ||||| ||||| ||||||||||||||||| ||||||||||||||||        ||||||||   ||  || |||||||| |||||||||||||    
T  37480685 ttaaaagtctttcgaatttcctccggcgtcttccctttgatcatgtccgccacagtctggcaggtaagatccagtagactcttgatattcaagtaatttg 37480784  T
Q  222 cagcttgaatgagttcgaaaagcatagcctgatcaac 258  Q
    ||||  |||||||  |||||||| |||||||||||||    
T  37480785 cagcaagaatgagaccgaaaagcttagcctgatcaac 37480821  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 6778755 - 6778701
Alignment:
Q  133 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 187  Q
    ||||| ||||| ||||| |||||||| |||||||| |||||||||||||||||||    
T  6778755 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccacag 6778701  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 186
Target Start/End: Complemental strand, 6774468 - 6774415
Alignment:
Q  133 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccaca 186  Q
    ||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||||    
T  6774468 ttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccaca 6774415  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Complemental strand, 6778677 - 6778619
Alignment:
Q  200 ctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaac 258  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||  || ||||||||||    
T  6778677 ctcttgatattcaagtaatttgcagcaagaatgagatcgaaaagtgtatcctgatcaac 6778619  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Original strand, 37476163 - 37476217
Alignment:
Q  133 ttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 187  Q
    ||||| ||||| ||||| ||||| || |||||||| |||||||||||||||||||    
T  37476163 ttaaaagtctttcgaatttcctctggtgtcttccctttgatcatgtccgccacag 37476217  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 37476241 - 37476299
Alignment:
Q  200 ctcttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaac 258  Q
    |||||||| |||||||||||||||||  ||||||| ||||||||  || ||||||||||    
T  37476241 ctcttgatattcaagtaatttgcagcaagaatgagatcgaaaagtttatcctgatcaac 37476299  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 8992611 - 8992555
Alignment:
Q  131 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 187  Q
    ||||||| ||||||||||||||||| || |||||||||||||||||||| |||||||    
T  8992611 tgttaaaggtcttgcgaatctcctcaggtgtcttccccttgatcatgtctgccacag 8992555  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 186
Target Start/End: Original strand, 45071637 - 45071692
Alignment:
Q  131 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccaca 186  Q
    ||||||| ||||| ||||| |||||||| |||||||| ||||||||||||||||||    
T  45071637 tgttaaaagtctttcgaatttcctccggtgtcttccctttgatcatgtccgccaca 45071692  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 52791814 - 52791851
Alignment:
Q  141 cttgcgaatctcctccggcgtcttccccttgatcatgt 178  Q
    ||||| |||||||||||||||||| |||||||||||||    
T  52791814 cttgcaaatctcctccggcgtcttacccttgatcatgt 52791851  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 55118972 - 55118903
Alignment:
Q  203 ttgatgttcaagtaatttgcagcttgaatgagttcgaaaagcatagcctgatcaacatgcttcatgaatt 272  Q
    ||||||||||||||| |||||||| ||| ||| |||  |||  || |||||||||| |||||||||||||    
T  55118972 ttgatgttcaagtaaattgcagctagaaggagatcgttaagggtatcctgatcaacctgcttcatgaatt 55118903  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 11160892 - 11160852
Alignment:
Q  139 gtcttgcgaatctcctccggcgtcttccccttgatcatgtc 179  Q
    ||||| |||||||||||||||||| | ||||||||||||||    
T  11160892 gtcttacgaatctcctccggcgtcctacccttgatcatgtc 11160852  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 187
Target Start/End: Complemental strand, 50915295 - 50915239
Alignment:
Q  131 tgttaaatgtcttgcgaatctcctccggcgtcttccccttgatcatgtccgccacag 187  Q
    ||||||| || || ||||| |||||||| |||||||| || ||||||||||||||||    
T  50915295 tgttaaaagtgtttcgaatttcctccggtgtcttccctttcatcatgtccgccacag 50915239  T

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