View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1414_low_7 (Length: 278)
Name: NF1414_low_7
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1414_low_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 4364918 - 4364649
Alignment:
| Q |
9 |
gtcgaagaatatggtccaatgaagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
108 |
Q |
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| T |
4364918 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4364819 |
T |
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| Q |
109 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtctgcaaatatctatcactcttgttaaacaaaatattgaactagacc--aaatataaaaaat |
206 |
Q |
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| T |
4364818 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatggaaatatctatcactcttgttaaacaaaatattcaactagaccaaaaataaaaaaaat |
4364719 |
T |
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| Q |
207 |
caaagactaataatttgtttgtattgcattttatagcattcctctaccaccatgggtacttgaagaaatcag |
278 |
Q |
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| T |
4364718 |
caaagactaat--ttggtttgtattgcattttatagcattcctctaccaccatgggtgctagaagaaatcag |
4364649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 9 - 278
Target Start/End: Complemental strand, 4372511 - 4372241
Alignment:
| Q |
9 |
gtcgaagaatatggtccaatgaagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
108 |
Q |
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| T |
4372511 |
gtcgaaaaagatggtccaatgaagtataattgggaagcttatgctgaacttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtctt |
4372412 |
T |
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| Q |
109 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtctgcaaatatctatcactcttgttaaacaaaatattgaactagaccaaatat---aaaaaa |
205 |
Q |
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| T |
4372411 |
ttcatcaatgtggtggaaatgttggtgactcttgcaggtatggaaatatctatcactcttgttaaacaaaatattcaactagaccaaaaataaaaaaaaa |
4372312 |
T |
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| Q |
206 |
tcaaagactaataatttgtttgtattgcattttatagcattcctctaccaccatgggtacttgaagaaatcag |
278 |
Q |
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| T |
4372311 |
tcaaagactaat--ttggtttgtattgcattttatagcattcctctaccaccatgggtgctagaagaaatcag |
4372241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 30 - 147
Target Start/End: Original strand, 41042653 - 41042770
Alignment:
| Q |
30 |
aagtataattgggaagcttatgctgagcttgttcagatggtacaaaaacatggtttgaagcttcaaattgttatgtcttttcatcaatgtggtggaaatg |
129 |
Q |
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| T |
41042653 |
aagtataactgggaagcttatgctgagcttgtgcagatggtgcaattgcatggtttgaagcttcaagttgttatgtcttttcatcagtgtggaggaaatg |
41042752 |
T |
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| Q |
130 |
ttggtgactcttgcaggt |
147 |
Q |
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| T |
41042753 |
ttggagattcctgcaggt |
41042770 |
T |
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