View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1414_low_8 (Length: 272)
Name: NF1414_low_8
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1414_low_8 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 130 - 272
Target Start/End: Original strand, 44035550 - 44035692
Alignment:
| Q |
130 |
ctagtccttcattgagttggaagaatttacaccagattgcggtagggatagctcgaggactagagtacttgcataaagggtgcaacactaggattcttca |
229 |
Q |
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| T |
44035550 |
ctagtccttcattgagttgggagaatttacaccagattgcaatagggatagctcgaggactagagtacttgcataaagggtgcaacactaggatttttca |
44035649 |
T |
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| Q |
230 |
tttcgacattaaatcacataacattcttttggacgaaacttac |
272 |
Q |
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| T |
44035650 |
tttcgacattaaaccacataacattcttttggacgaaacttac |
44035692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 44035421 - 44035494
Alignment:
| Q |
1 |
tcactcttttcggtttttatcttgttggaaccagaaatgctctcgcatatgagtttatgtccaatggttcactt |
74 |
Q |
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| T |
44035421 |
tcactcttttaggattttgtcttgatggaaccaaaaaagctctcatctatgagtttatgtccaatggttcactt |
44035494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 31189722 - 31189636
Alignment:
| Q |
173 |
agggatagctcgaggactagagtacttgcataaagggtgcaacactaggattcttcatttcgacattaaatcacataacattctttt |
259 |
Q |
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| T |
31189722 |
agggatagcccgtggactagagtacttgcatagaggatgtaccacaagaattttacatttcgacataaaaccacataacattctttt |
31189636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 31145664 - 31145578
Alignment:
| Q |
173 |
agggatagctcgaggactagagtacttgcataaagggtgcaacactaggattcttcatttcgacattaaatcacataacattctttt |
259 |
Q |
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| T |
31145664 |
agggatagctcgtgggctagagtacttgcatagaggatgtaccactcgaattttacattttgacataaaaccacataacattctttt |
31145578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 259
Target Start/End: Complemental strand, 31171977 - 31171891
Alignment:
| Q |
173 |
agggatagctcgaggactagagtacttgcataaagggtgcaacactaggattcttcatttcgacattaaatcacataacattctttt |
259 |
Q |
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| T |
31171977 |
agggatagctcgtgggctagagtacttgcatagaggatgtaccactcgaattttacattttgacataaaaccacataacattctttt |
31171891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 259
Target Start/End: Complemental strand, 31201525 - 31201443
Alignment:
| Q |
177 |
atagctcgaggactagagtacttgcataaagggtgcaacactaggattcttcatttcgacattaaatcacataacattctttt |
259 |
Q |
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| T |
31201525 |
atagctcgtggactagagtacttgcatagaggatgtaccactcgaattttacatttcgacataaaaccacataatattctttt |
31201443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 31224427 - 31224513
Alignment:
| Q |
173 |
agggatagctcgaggactagagtacttgcataaagggtgcaacactaggattcttcatttcgacattaaatcacataacattctttt |
259 |
Q |
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| T |
31224427 |
agggatagctcgtggactagagtacttgcatggaggatgtaccactagaattttacattttgacataaaaccacacaacatcctttt |
31224513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 49725104 - 49725188
Alignment:
| Q |
178 |
tagctcgaggactagagtacttgcataaagggtgcaacactaggattcttcatttcgacattaaatcacataacattcttttgga |
262 |
Q |
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| T |
49725104 |
tagctcgagggctagaatacctgcacaaaggctgcaatactagaattttgcattttgacataaaacctcataacattcttttgga |
49725188 |
T |
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