View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1414_low_9 (Length: 269)
Name: NF1414_low_9
Description: NF1414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1414_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 255
Target Start/End: Original strand, 43999831 - 44000079
Alignment:
| Q |
9 |
ttattctataattgccttgtagatgacttaggcgtgtaaaattatcaattggttcacatcattcttcannnnnnnnn--gaaaggaaatcattcttcatt |
106 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43999831 |
ttattccataattgccttgtagatgacttaggcgtgtaaaattatcagttggttcacatcattcttcatttttttttttgaaaggaaatcattcttcatt |
43999930 |
T |
|
| Q |
107 |
tttgtaagtatgcaaaagttagaaatatatccaattgtttctgaacataccaatttcaatttgaagacaacaatagaaggttggtttccaaacttcagtt |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43999931 |
tttgtaagtatgcaaaagttagaaatatatccaattgtttctgaacataccaatttcaatttgaagacaacaatagaaggttggtttccaaacttcagtt |
44000030 |
T |
|
| Q |
207 |
ctcttattttgattctacatttgttatatccatttttcaattatctttg |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44000031 |
ctcttattttgattctacatttgttatatccatttttcaattatctttg |
44000079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University