View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14150_high_1 (Length: 965)
Name: NF14150_high_1
Description: NF14150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14150_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 39 - 689
Target Start/End: Original strand, 22302816 - 22303489
Alignment:
| Q |
39 |
catcatcatcatcataaccatcaccacatgaccagaaaaataaaacactcataataaaaacaactttgctttaacaacataatataaataaggaaagtga |
138 |
Q |
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| T |
22302816 |
catcatcatcatcataaccatcaccacatgaccagaaaaataaaacactcataagaaaaacaactttgctttaacaacataatataaataaggaaagtga |
22302915 |
T |
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| Q |
139 |
aaacagttcaaaaacatatgagtctctcaccttaaaaagattaccaacnnnnnnngaaaatctgatctgaaaccaggtttaaaagaactt---------g |
229 |
Q |
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| T |
22302916 |
aaacagttgaaaaacatatgagtctctcaccttaaaaagattaccaacaaaaaaagaaaatctgatctgaaac-agcttatacaaaacttaacaaagttg |
22303014 |
T |
|
| Q |
230 |
aactgaaggagtttaagataagaaggttatggttgttttgtttgaggttgtttgttaaaagcttaggaggaagagatttgtaa-gggacaaaggttgttg |
328 |
Q |
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| T |
22303015 |
aactgaaggagtttaagataagaaggttatggttgttttgtttgaggttgtttgttaaaagcttaggaggaagagatttgtaaagggacaaaggttgttg |
22303114 |
T |
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| Q |
329 |
ttg---aagtgttttggtttggtccactttgaagtgtctctcaagtgcgtttgtggtatttgtatatagctacggacgccaacaaagaaagtctccta-- |
423 |
Q |
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| T |
22303115 |
ttgttgaagtgttttggtttggtccactttgaagtgtctctcaagtgcgtttgtggtatttgtatatagctacggacgccaacaaggaaagtctcctatt |
22303214 |
T |
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| Q |
424 |
-------atttctaaaaatatattattattaaccaacccaatattttaagac----tagagaaaatatatgtacggttcgtacaa-gtatatctagaatt |
511 |
Q |
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| T |
22303215 |
ctgtgaaatttctaaaaatatattatta---accaaccctatattttaagacagactagagaaaatatatgtacggttcgtacaaagtatatctagaatt |
22303311 |
T |
|
| Q |
512 |
ttgaaactctattttattttatttttacagaaatgtactgtttgcatttattataaataaaatcttcaatgcaaggaggaaaatgttcaaataaatggtg |
611 |
Q |
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| T |
22303312 |
ttgaaactctattttatttaatttttacagaaatgtactgtttgcatttattataaataaaatcttcaatgcaaggaggaaaatattcaaataaatggtg |
22303411 |
T |
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| Q |
612 |
agttggtgcctaatagtagcaatgtgatatttatatcctaaaatatatacctcaactaataatattgatattattcga |
689 |
Q |
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| T |
22303412 |
agttggtgcctgacagtagcaatgtgatatttatatcctaaaatacataactcaactaataatattgatattattcga |
22303489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 699 - 859
Target Start/End: Original strand, 22303472 - 22303632
Alignment:
| Q |
699 |
aatattaatattattcgagtaaccattttcgctctgttttttaaggtgattttagaccaatttctttatgtaatgttattaataaatttgtcgcaaaaac |
798 |
Q |
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| T |
22303472 |
aatattgatattattcgagtaaccattttcgctctgttttttaaggtgattttagaccaatttctttatgtaatgttattaataaaattgtcgcaaaaac |
22303571 |
T |
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| Q |
799 |
tataacaaatggtctaaaattaattctaccagatataattgatctatcttaaagtggtttt |
859 |
Q |
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| T |
22303572 |
tataacgaatggtctaaaattaattctaccagatataattgatctatcttaaagtgctttt |
22303632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 909 - 954
Target Start/End: Original strand, 22304759 - 22304804
Alignment:
| Q |
909 |
gttttgtaaccttgtagggttgaagctttatgtccaaactgatgat |
954 |
Q |
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| T |
22304759 |
gttttgtagccttgtaaggttgaagctttatgtccaaacttatgat |
22304804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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