View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14150_high_13 (Length: 355)
Name: NF14150_high_13
Description: NF14150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14150_high_13 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 68 - 355
Target Start/End: Complemental strand, 32856328 - 32856041
Alignment:
| Q |
68 |
aatgacaaaggttagtaattagttgttaaatttagatctatttctttgtccacgttcgaacccaaaacccccaactctttctctcttaactcaaagcaag |
167 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32856328 |
aatgacaaaggttagtaattagttgttaaatttagatctatttctctgtccacgttcgaacccagaacccccaactctttctctcttaactcaaagcaag |
32856229 |
T |
|
| Q |
168 |
agctatccaaccctctctcatccgtggtttctaatttggggaaaatgttggattagaaatagattaaaaagtgtatctgtttctacataaattgtgcaga |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32856228 |
agctatccaaccctctctcatccgtggtttctaatttggggaaaatgttagattagaaatagattaaaaagtgtatctgtttctacataaattgtgcaga |
32856129 |
T |
|
| Q |
268 |
aattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtagtagccacagagtgcagaacagttacagtgctttgaa |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32856128 |
aattaaagtgtgatttctttccaaagagagatgatttattgggtgacggtagtagccacagagtgcagaacagttacagtgctttgaa |
32856041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 321
Target Start/End: Complemental strand, 32850766 - 32850670
Alignment:
| Q |
220 |
ttagaaatagattaaaaagtgtatctgtttctacataaattgtgcagaaattaaagtgtgatttctttccaaagagagatgatttattgggtgatggtag |
319 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||| | || |||||| |||||||||| | ||||| ||||| |
|
|
| T |
32850766 |
ttagaaatagatgaaaaagtgtagctgtttctgcataaattgtgcag-----gaagtgtgattaccttgcaaagatagatgatttactaggtgacggtag |
32850672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 99
Target Start/End: Original strand, 10223394 - 10223426
Alignment:
| Q |
67 |
taatgacaaaggttagtaattagttgttaaatt |
99 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
10223394 |
taatgacaaatgttagtaattagttgttaaatt |
10223426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University