View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14150_high_14 (Length: 344)
Name: NF14150_high_14
Description: NF14150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14150_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 107 - 267
Target Start/End: Complemental strand, 22303632 - 22303472
Alignment:
| Q |
107 |
aaaaccactttaagatagatcaattatatctggtagaattaactttagaccatttgttatagtttttgcgacaaatttattaataacattacataaagaa |
206 |
Q |
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| T |
22303632 |
aaaagcactttaagatagatcaattatatctggtagaattaattttagaccattcgttatagtttttgcgacaattttattaataacattacataaagaa |
22303533 |
T |
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| Q |
207 |
attggtctaaaatcaccttaaaaaacagagcgaaaatggttactcgaataatattaatatt |
267 |
Q |
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| T |
22303532 |
attggtctaaaatcaccttaaaaaacagagcgaaaatggttactcgaataatatcaatatt |
22303472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 277 - 335
Target Start/End: Complemental strand, 22303489 - 22303431
Alignment:
| Q |
277 |
tcgaataatatcaatattattagttgaggtatatattttaggatataaatatcacattg |
335 |
Q |
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| T |
22303489 |
tcgaataatatcaatattattagttgagttatgtattttaggatataaatatcacattg |
22303431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 22304804 - 22304759
Alignment:
| Q |
12 |
atcatcagtttggacataaagcttcaaccctacaaggttacaaaac |
57 |
Q |
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| T |
22304804 |
atcataagtttggacataaagcttcaaccttacaaggctacaaaac |
22304759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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