View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14150_high_19 (Length: 300)
Name: NF14150_high_19
Description: NF14150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14150_high_19 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 129 - 300
Target Start/End: Original strand, 4202961 - 4203132
Alignment:
| Q |
129 |
ggcaaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtc |
228 |
Q |
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| T |
4202961 |
ggcaaacatctccacctcccgttctcgacgacgtgtcgaaggaatccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtc |
4203060 |
T |
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| Q |
229 |
ctacatcttctaaacacacaatctttcttagccctattaccacaatcttgacaaactctatactcagaacca |
300 |
Q |
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| T |
4203061 |
ctacatcttctaaacacacaatctttcttagccctattaccacaatcttgacacactctatactcagaacca |
4203132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 4202864 - 4202944
Alignment:
| Q |
20 |
agttagagctatgagaagtagcagcagcattttgggatgaccctaataaacctttttgtctcttaacaccagaacaaccct |
100 |
Q |
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| T |
4202864 |
agttagagctatgagaagtagcagcagcattttgtgatgaccctaataaacctttttgtctcttaacaccagaacaaccct |
4202944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0363 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 294
Target Start/End: Original strand, 16960 - 17082
Alignment:
| Q |
172 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
271 |
Q |
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| T |
16960 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
17059 |
T |
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| Q |
272 |
aatcttgacaaactctatactca |
294 |
Q |
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| T |
17060 |
aatcttgacaaaccctaaactca |
17082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 172 - 294
Target Start/End: Complemental strand, 14512853 - 14512731
Alignment:
| Q |
172 |
atccaagtactcttcaaatgagtactacaatcataaccacgtcccttacaacaagtcctacatcttctaaacacacaatctttcttagccctattaccac |
271 |
Q |
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| T |
14512853 |
atccacgtgctcttcacgtgagtactacaatcaaatccacgacctttacaacaagtcctacatcttttatagctacaatctttcttagctctatttccac |
14512754 |
T |
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| Q |
272 |
aatcttgacaaactctatactca |
294 |
Q |
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| T |
14512753 |
aatcttgacaaaccctaaactca |
14512731 |
T |
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