View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14150_high_6 (Length: 402)

Name: NF14150_high_6
Description: NF14150
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14150_high_6
NF14150_high_6
[»] chr5 (1 HSPs)
chr5 (18-79)||(5313772-5313833)
[»] chr1 (2 HSPs)
chr1 (227-328)||(7016123-7016224)
chr1 (250-294)||(23915668-23915712)
[»] chr3 (2 HSPs)
chr3 (252-327)||(1072782-1072857)
chr3 (227-327)||(9505169-9505269)
[»] chr4 (2 HSPs)
chr4 (230-336)||(19455209-19455315)
chr4 (227-294)||(48339147-48339214)
[»] scaffold0204 (1 HSPs)
scaffold0204 (227-294)||(26669-26736)


Alignment Details
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 5313772 - 5313833
Alignment:
Q  18 atcagatgcaccgaccttaatcacgacgtctgttaagacatccaatcttaacgctcgagcga 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5313772 atcagatgcaccgaccttaatcacgacgtctgttaagacatccaatcttaacgctcgagcga 5313833  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 328
Target Start/End: Original strand, 7016123 - 7016224
Alignment:
Q  227 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatat 326  Q
    |||||||||| ||||||  ||| ||||||||||| |||||||| | ||||| |||| ||||||||||||| |||| |||| | || | |||||| |||||    
T  7016123 ttcgacaattgatttgttgaacttggttcatgaaccaaatgagctgaacttgagctcaaaactaagtttgttaacctaataagctgagcttgagctatat 7016222  T
Q  327 ac 328  Q
    ||    
T  7016223 ac 7016224  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 250 - 294
Target Start/End: Original strand, 23915668 - 23915712
Alignment:
Q  250 tggttcatgaatcaaatgagtttaactttagctgaaaactaagtt 294  Q
    ||||||||||| |||||||| | ||||||||||||||| ||||||    
T  23915668 tggttcatgaaccaaatgagctgaactttagctgaaaattaagtt 23915712  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 327
Target Start/End: Original strand, 1072782 - 1072857
Alignment:
Q  252 gttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatata 327  Q
    ||||||||| |||||||||| |  || ||| ||||| |||||||| ||| |||||||||| |||||||||||||||    
T  1072782 gttcatgaaccaaatgagttgagtttgagccgaaaattaagtttgttaatataatgaactgaacttgagttatata 1072857  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 327
Target Start/End: Original strand, 9505169 - 9505269
Alignment:
Q  227 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatat 326  Q
    |||||||||||| | ||  ||| ||||||||||| |||||||||| ||||| ||||||||| |||||| | |||   ||||| || |||||||| |||||    
T  9505169 ttcgacaattaactcgttgaacttggttcatgaaccaaatgagttgaacttgagctgaaaattaagttcgttaaataaatgagctgaacttgagatatat 9505268  T
Q  327 a 327  Q
    |    
T  9505269 a 9505269  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 336
Target Start/End: Original strand, 19455209 - 19455315
Alignment:
Q  230 gacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtttgctaacataatgaactaaacttgagttatataca 329  Q
    ||||||||||| ||  ||| |||||||||||||||||||| | ||||| || |||||| |||||||| || |  |||||  | |||||||| ||||||||    
T  19455209 gacaattaattcgttgaacttggttcatgaatcaaatgagctgaacttgagttgaaaattaagtttgttatctaaatgagttgaacttgagctatataca 19455308  T
Q  330 attcgac 336  Q
     ||||||    
T  19455309 gttcgac 19455315  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 48339147 - 48339214
Alignment:
Q  227 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtt 294  Q
    |||||||| | ||||||  ||| |||||||||||||||||||||  ||||| ||||||||| ||||||    
T  48339147 ttcgacaactgatttgttgaacttggttcatgaatcaaatgagtcgaacttgagctgaaaattaagtt 48339214  T

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Target: scaffold0204 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 26669 - 26736
Alignment:
Q  227 ttcgacaattaatttgtgaaacatggttcatgaatcaaatgagtttaactttagctgaaaactaagtt 294  Q
    |||||||| | ||||||  ||| |||||||||||||||||||||  ||||| ||||||||| ||||||    
T  26669 ttcgacaactgatttgttgaacttggttcatgaatcaaatgagtcgaacttgagctgaaaattaagtt 26736  T

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