View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14151_high_11 (Length: 507)

Name: NF14151_high_11
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14151_high_11
NF14151_high_11
[»] chr5 (1 HSPs)
chr5 (5-492)||(40263738-40264225)
[»] chr3 (10 HSPs)
chr3 (176-209)||(17750282-17750315)
chr3 (176-209)||(19051602-19051635)
chr3 (176-208)||(27908927-27908959)
chr3 (176-208)||(28473274-28473306)
chr3 (176-208)||(28493315-28493347)
chr3 (176-208)||(28514293-28514325)
chr3 (176-208)||(11407923-11407955)
chr3 (180-208)||(27997719-27997747)
chr3 (176-208)||(28046560-28046592)
chr3 (176-208)||(28078533-28078565)
[»] chr4 (2 HSPs)
chr4 (176-208)||(9331208-9331240)
chr4 (176-208)||(9384991-9385023)


Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 5 - 492
Target Start/End: Original strand, 40263738 - 40264225
Alignment:
Q  5 ggaatgaagtagaagagtcttgagtttcgggcactgcaattgatcaacaggaggaagattctccatgccccataaggatattgcagtcaactcttttaca 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40263738 ggaatgaagtagaagagtcttgagtttcgggcactgcaattgatcaacaggaggaagattctccatgccccataaggatattgcagtcaactcttttaca 40263837  T
Q  105 ttttcttctatttctgccaatgttttggtaggtaccttaattgctttaccttctttggaagcaatccataaggctgcatcacgaaccaagtcatgcattt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40263838 ttttcttctatttctgccaatgttttggtaggtaccttaattgctttaccttctttggaagcaatccataaggctgcatcacgaaccaagtcatgcattt 40263937  T
Q  205 tcacaaattcttttttgccacattgttgcaacaaatatgaatctttgaggatgagcaaggtcacttgtatctctctcctcactttctccattgtgccaat 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40263938 tcacaaattcttttttgccacattgttgcaacaaatatgaatctttgaggatgagcaaggtcacttgtatctctctcctcactttctccattgtgccaat 40264037  T
Q  305 agtcccagcagctggtccaagtcccttaatgtacctaaccaaatcttccacattgatctcccagtcttcaggaaacattgagcacaataagaagagattt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40264038 agtcccagcagctggtccaagtcccttaatgtacctaaccaaatcttccacattgatctcccagtcttcaggaaacattgagcacaataagaagagattt 40264137  T
Q  405 ttagacacttgctttgtcaaattgtcatagcttaacttgatacatgcataacaactactcagtacttcttcaccgtctattgtctgtg 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  40264138 ttagacacttgctttgtcaaattgtcatagcttaacttgatacatgcataacaactactcagtacttcttcaccatctattgtctgtg 40264225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 17750282 - 17750315
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcaca 209  Q
    ||||||||||||||||||||||||||||||||||    
T  17750282 ggctgcatcacgaaccaagtcatgcattttcaca 17750315  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 176 - 209
Target Start/End: Original strand, 19051602 - 19051635
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcaca 209  Q
    ||||||||||||||||||||||||||||||||||    
T  19051602 ggctgcatcacgaaccaagtcatgcattttcaca 19051635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 27908959 - 27908927
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcac 208  Q
    |||||||||||||||||||||||||||||||||    
T  27908959 ggctgcatcacgaaccaagtcatgcattttcac 27908927  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 28473274 - 28473306
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcac 208  Q
    |||||||||||||||||||||||||||||||||    
T  28473274 ggctgcatcacgaaccaagtcatgcattttcac 28473306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 28493315 - 28493347
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcac 208  Q
    |||||||||||||||||||||||||||||||||    
T  28493315 ggctgcatcacgaaccaagtcatgcattttcac 28493347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 28514293 - 28514325
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcac 208  Q
    |||||||||||||||||||||||||||||||||    
T  28514293 ggctgcatcacgaaccaagtcatgcattttcac 28514325  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 11407955 - 11407923
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcac 208  Q
    |||| ||||||||||||||||||||||||||||    
T  11407955 ggctacatcacgaaccaagtcatgcattttcac 11407923  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 208
Target Start/End: Complemental strand, 27997747 - 27997719
Alignment:
Q  180 gcatcacgaaccaagtcatgcattttcac 208  Q
    |||||||||||||||||||||||||||||    
T  27997747 gcatcacgaaccaagtcatgcattttcac 27997719  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 28046592 - 28046560
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcac 208  Q
    |||||||||| ||||||||||||||||||||||    
T  28046592 ggctgcatcatgaaccaagtcatgcattttcac 28046560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 28078565 - 28078533
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcac 208  Q
    ||||||||||||||| |||||||||||||||||    
T  28078565 ggctgcatcacgaactaagtcatgcattttcac 28078533  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 9331208 - 9331240
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcac 208  Q
    |||||||||||||||||||||||||||||||||    
T  9331208 ggctgcatcacgaaccaagtcatgcattttcac 9331240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 9384991 - 9385023
Alignment:
Q  176 ggctgcatcacgaaccaagtcatgcattttcac 208  Q
    |||||||||||||||||||||||||||||||||    
T  9384991 ggctgcatcacgaaccaagtcatgcattttcac 9385023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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