View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14151_high_16 (Length: 451)
Name: NF14151_high_16
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 19 - 449
Target Start/End: Original strand, 53453183 - 53453613
Alignment:
| Q |
19 |
tccacaacaagaacaaaaacaagaattcatattccgttctaaactccccgatattgaaattccaacacaccttccattacactcttactgtttccaaaac |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53453183 |
tccacaacaagaacaaaaacaagaattcatattccgttctaaacttcccgatattgaaattccaacacaccttccattacactcttactgtttccaaaac |
53453282 |
T |
|
| Q |
119 |
ctctctcaattcaacaaccgtccatgtctcatcaacggcgacaccggcgaaaccctaacctactccgacgtccacctcaccgtccgcaaattcgcctctg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |
|
|
| T |
53453283 |
ctctctcaattcaacaaccgtccatgtctcatcaacggcgacaccggcgaaaccctaacctactccgacgtccacctcaccgtccgcaaaatcgcagccg |
53453382 |
T |
|
| Q |
219 |
gtctaaacactcttggaatccaacaaggtgatgtcatcatgatcgtcctccgtaactctcctcaatttgctctcaccttcctcggtgcctccttccgtgg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
53453383 |
gtctaaacactcttggaatccaacaaggtgatgtcatcatgatcgtcctccgtaactctcctcaatttgcactcaccttcctcggtgcctccttccgcgg |
53453482 |
T |
|
| Q |
319 |
cgcggttatcaccaccgcaaatcccttctacacctcatcggagctcgctaaacaagccaccgcaacaaaatctaaactcatcataacacaatccgcgtat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
53453483 |
cgcggttatcaccaccgcaaatcccttctacacctcatcggagctcgctaaacaagccaccgcaacaaaatctaaactcatcataacacaatccgtatat |
53453582 |
T |
|
| Q |
419 |
ctcaataaaatcaatgatttcgcaaaactca |
449 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |
|
|
| T |
53453583 |
ctcaataaaatcaacgatttcgcaaaactca |
53453613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University