View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_high_18 (Length: 434)
Name: NF14151_high_18
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 34287980 - 34287545
Alignment:
| Q |
1 |
ggaaatctagcatcactcattttaacatacattcagacacattattttttattggttaaaatttatgagttccactaaatttatgagacccacgtaactt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34287980 |
ggaaatctagcatcactcattttaacatacattcagacacattatcttttattggttaaaatttatgagttccactaaatttatgagacccacgtaactt |
34287881 |
T |
|
| Q |
101 |
ggtgggacttatatgaatttcaagcaataaagaaagcgtgttggaa------------------tgggtgt-ggtagagggtgtcttcttagcattattc |
181 |
Q |
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| T |
34287880 |
ggtggaacttatatgaatttcaagcaataaagaaagcgtgttggaagacaccctctaccaaatttgcgtgttggtagagggtgtcttcttagcattattc |
34287781 |
T |
|
| Q |
182 |
atcgcatgtaatattcaatattcacattatatggttcagtatgaaaaatattgaagtttgtctcaaatgctaagagggtgcaaccatattgacttgtgtg |
281 |
Q |
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| T |
34287780 |
atcgcatgtaatattcaatattcacattatatggttcagtatgaaaaatattgaagtttgtctcaaatgctaagagggtgcaaccatattgacttgtg-- |
34287683 |
T |
|
| Q |
282 |
ggtgttgtcaaccagaggtatatgattatgatttctgtgcaagtatgttcagttatgtatttatgcagattccattatatttgattatgttttacaaatg |
381 |
Q |
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| T |
34287682 |
ggtgttgtcaaccagaggtatatgattataatttctgtgcaagtatgttcagttatgtatttctgcagattccattatatttgattatgttttacaaatg |
34287583 |
T |
|
| Q |
382 |
caatggcaacatggaaagaaaggattctatgttgaacc |
419 |
Q |
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| T |
34287582 |
caatggcagcatggaaagaaaggattctatgttgaacc |
34287545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 28 - 184
Target Start/End: Complemental strand, 34297174 - 34297017
Alignment:
| Q |
28 |
tacattcagacacattattttttattggttaaaatt--tatgagttccactaaattta-tgagacccacgtaacttggtgggacttatatgaatttcaag |
124 |
Q |
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|||||||| ||||||| | |||| |||||||||||| ||||||||||| |||||||| || |||| |||| ||||||| |||||||||||||||||| |
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| T |
34297174 |
tacattcaaacacattctctttttttggttaaaattcatatgagttccagtaaatttaatggaacccgtgtaatttggtggaacttatatgaatttcaag |
34297075 |
T |
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| Q |
125 |
caataaagaaagcgtgttggaatgggtgtggtagagggtgtcttcttagcattattcatc |
184 |
Q |
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|||||||| || |||||| |||| |||| |||||| ||||||||||||||||||||||| |
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| T |
34297074 |
caataaag--agtgtgttgaaatgtgtgtagtagagcgtgtcttcttagcattattcatc |
34297017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 34281547 - 34281463
Alignment:
| Q |
52 |
ttggttaaaatt--tatgagttccactaaattt--atgagacccacgtaacttggtgggacttatatgaatttcaagcaataaaga |
133 |
Q |
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| T |
34281547 |
ttggttaaaattcatataagtttcactaaatttttatgggaccgacg-aacttggtgggacatatatgaatttcaagcaataaaga |
34281463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 190 - 419
Target Start/End: Original strand, 44179744 - 44179971
Alignment:
| Q |
190 |
taatattcaatattcacattatatggttcagtatgaaaaa-tattgaagtttgtctcaaatgctaagag----ggtgcaaccatattgacttgtgtgggt |
284 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||| ||||| || || |||||| ||| | |
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| T |
44179744 |
taatattctgtattcacattatatggttcagtacgaaaaaatattgaagtttgtctcgaacgctaagagtgagggtgcgacaattttgactggtggg--- |
44179840 |
T |
|
| Q |
285 |
gttgtcaaccagaggtatatgattatgatttctgtgcaagtatgttcagttatgtatttatgcagattccattatatttgattatgttttacaaatgcaa |
384 |
Q |
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| || ||||||||||| ||||||| ||||||||||||| |||||||||| |||||| ||||| |||||| ||| |||||||||||||| |||||| | |
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| T |
44179841 |
--tctcgaccagaggtat--gattatgctttctgtgcaagtgtgttcagttaggtatttctgcagtttccatgataattgattatgttttataaatgcga |
44179936 |
T |
|
| Q |
385 |
tggcaacatggaaagaaaggattctatgttgaacc |
419 |
Q |
| |
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||||| ||| |||||||||||||| ||||||||| |
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| T |
44179937 |
tggcagcatctaaagaaaggattctttgttgaacc |
44179971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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