View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_high_19 (Length: 428)
Name: NF14151_high_19
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_high_19 |
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Alignment Details
Target: chr7 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 11 - 395
Target Start/End: Complemental strand, 14788688 - 14788304
Alignment:
| Q |
11 |
catcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaatgatgtttccattttaaaatg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788688 |
catcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaatgatgtttccattttaaaatg |
14788589 |
T |
|
| Q |
111 |
tttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggacaaagtttatttgaagcaacaatgaaagaataatattagaaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14788588 |
tttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggacaaagtttatttgaagcaacaatgaaaaaataatattagaaa |
14788489 |
T |
|
| Q |
211 |
atagactcatgctaacaagtgcttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaa |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14788488 |
atagactcatgctaacaagtgcttgttatgaaggtaaaaaaggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgtaaggtgtaaa |
14788389 |
T |
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| Q |
311 |
atacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact |
395 |
Q |
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| T |
14788388 |
atacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact |
14788304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 306 - 395
Target Start/End: Complemental strand, 15229430 - 15229341
Alignment:
| Q |
306 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact |
395 |
Q |
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| T |
15229430 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact |
15229341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 306 - 395
Target Start/End: Complemental strand, 15239555 - 15239466
Alignment:
| Q |
306 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact |
395 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15239555 |
gtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact |
15239466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 210
Target Start/End: Original strand, 17543859 - 17544057
Alignment:
| Q |
11 |
catcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaatgatgtttccattttaaaatg |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543859 |
catcatcaaggtaactcacatgagatttattagagtttgataaccaactatatgaaaaactatcactagcaagaggcaatgatgtttccattttaaaatg |
17543958 |
T |
|
| Q |
111 |
tttattgcaacagatgtgttgtgtgaattaatataaaaaacgtgtataccaataaggacaaagtttatttgaagcaacaatgaaagaataatattagaaa |
210 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17543959 |
tttattgcaacagatgtgttgtgtgaattaatat-aaaaatgtgtataccaataaggacaaagtttatttgaagcaacaatgaaagaataatattagaaa |
17544057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 202 - 395
Target Start/End: Original strand, 17544475 - 17544668
Alignment:
| Q |
202 |
tattagaaaatagactcatgctaacaagtgcttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgta |
301 |
Q |
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|
|||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17544475 |
tattagaacatagactcatgctaacaagtgcttgttatgaaggtaaaaaaggaaataagtgatatattataagtaaaaaatgtcaatttctaaagttgta |
17544574 |
T |
|
| Q |
302 |
aggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact |
395 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17544575 |
aggtgtaaaatacatctttctcaaggtgtaaacttcttaaccaaaacatcatatgggttaaaaagtttcgacatgaaaatacaacctagatact |
17544668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 232 - 298
Target Start/End: Complemental strand, 9045229 - 9045163
Alignment:
| Q |
232 |
cttgttatgaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt |
298 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||| ||| |||||||||| || ||||||||||||| |
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| T |
9045229 |
cttgttaagaaggtaaaaatagaaataagtgataaatttaaagtaaaaaaagttaatttctaaagtt |
9045163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 298
Target Start/End: Original strand, 35507145 - 35507203
Alignment:
| Q |
240 |
gaaggtaaaaatggaaataagtgatatattataagtaaaaaatgtcaatttctaaagtt |
298 |
Q |
| |
|
|||| ||||||||||||||||||||| ||| | |||||||| ||||||||||| |||| |
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| T |
35507145 |
gaagctaaaaatggaaataagtgataaattcaaggtaaaaaaagtcaatttctagagtt |
35507203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 47458 - 47506
Alignment:
| Q |
217 |
tcatgctaacaagtg-cttgttatgaaggtaaaaatggaaataagtgat |
264 |
Q |
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||||||||||||||| ||||||| |||| ||||||||||| |||||||| |
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| T |
47458 |
tcatgctaacaagtgacttgttaagaagttaaaaatggaattaagtgat |
47506 |
T |
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