View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_high_2 (Length: 636)
Name: NF14151_high_2
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 149; Significance: 2e-78; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 92 - 240
Target Start/End: Original strand, 5143211 - 5143359
Alignment:
| Q |
92 |
tataatgggtttgtggttatcaaaagtagcgtatacatagaataagaaaagataaggttgttttgaaaagtatatgtataaaataaagatatgtgttcat |
191 |
Q |
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| T |
5143211 |
tataatgggtttgtggttatcaaaagtagcgtatacatagaataagaaaagataaggttgttttgaaaagtatatgtataaaataaagatatgtgttcat |
5143310 |
T |
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| Q |
192 |
cgaaagaaggtaaaaagatacctgtataaaaacaaatcaagaagcaata |
240 |
Q |
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| T |
5143311 |
cgaaagaaggtaaaaagatacctgtataaaaacaaatcaagaagcaata |
5143359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 5143090 - 5143185
Alignment:
| Q |
1 |
ggcataaattgattgaatgtgtatctaaaataattttacatttctcagtacatagaaattaaatcctttaaaaatttataaaagaatttaatataa |
96 |
Q |
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| T |
5143090 |
ggcataaattgattgaatgtgtttctaaaataattttacatttctcagtacatagaaattaaatcctttaaaaatttataaaagaatttaatataa |
5143185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 340 - 448
Target Start/End: Complemental strand, 5166811 - 5166699
Alignment:
| Q |
340 |
ggaacatggaaatttatagatgtccattttgtcaaaggtttctcattgcagt----tggtcagccagcaattttaaaagacgatatcaatccatattagt |
435 |
Q |
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| T |
5166811 |
ggaacatggaaatttatagatgtccattttatcaaaggtttctcattgcattgcagttgtcagccagcaattttaaaagacgatatcaatccatattagt |
5166712 |
T |
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| Q |
436 |
aattaattatgta |
448 |
Q |
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| T |
5166711 |
atttaaatatgta |
5166699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 5167034 - 5166914
Alignment:
| Q |
101 |
tttgtggttatcaaaagtagcgtatacatagaataagaaaagataaggttgttttgaaaagtatatg----tataaaataaagatatgtgttcatcgaaa |
196 |
Q |
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| T |
5167034 |
tttgtggcgatcaaaattggcgtatgcatagaataagaaaatataaggctgttttgaaaggtgtatgcataaataaaataaagatatgtgttcatcgaaa |
5166935 |
T |
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| Q |
197 |
gaaggtaaaaagatacctgta |
217 |
Q |
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|||||||||||||||| |||| |
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| T |
5166934 |
gaaggtaaaaagatacgtgta |
5166914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 457 - 567
Target Start/End: Complemental strand, 5166660 - 5166551
Alignment:
| Q |
457 |
tcgttatggaaagaatgattaaaatcaaaacaagctataaagtgacaaggaagaaatatatgttaagtttcaccgcactgcacaccagaacaatagtata |
556 |
Q |
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|||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||| | || ||||||||| || ||||||| |||||| |
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| T |
5166660 |
tcgttatggaaagaatgatttaaatcaaaacaagccatgaagtgacaaggaagaaacatatgttacg-ttgaccgcactggtcaatagaacaacagtata |
5166562 |
T |
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| Q |
557 |
taaattcatct |
567 |
Q |
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||||||||||| |
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| T |
5166561 |
taaattcatct |
5166551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 5167790 - 5167696
Alignment:
| Q |
1 |
ggcataaattgattgaatgtgtatctaaaataattttacatt-----tctcagtacatagaaattaaatcctttaaaaatttataaaagaatttaat |
92 |
Q |
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||||||||||||||||| |||| ||||||||| |||||||| | || ||||||||||||||||| |||||| |||||||||||| ||||||| |
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| T |
5167790 |
ggcataaattgattgaacgtgt--ctaaaataaatttacattatcattatcggtacatagaaattaaatgctttaagaatttataaaaggatttaat |
5167696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 351 - 384
Target Start/End: Complemental strand, 5185483 - 5185450
Alignment:
| Q |
351 |
atttatagatgtccattttgtcaaaggtttctca |
384 |
Q |
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| T |
5185483 |
atttatagacgtccattttgtcaaaggtttctca |
5185450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 438 - 509
Target Start/End: Original strand, 5268724 - 5268796
Alignment:
| Q |
438 |
ttaattatgtaaaaa-attttcgttatggaaagaatgattaaaatcaaaacaagctataaagtgacaaggaag |
509 |
Q |
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||||||||||| ||| ||| |||| ||||||| ||| ||||||||| |||||||| || || ||||||||||| |
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| T |
5268724 |
ttaattatgtataaatattgtcgtgatggaaacaataattaaaatccaaacaagccatgaactgacaaggaag |
5268796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 503
Target Start/End: Original strand, 44838985 - 44839031
Alignment:
| Q |
457 |
tcgttatggaaagaatgattaaaatcaaaacaagctataaagtgaca |
503 |
Q |
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| T |
44838985 |
tcgttatggaaagaatgattaaaatccaaacaagccatgaagtgaca |
44839031 |
T |
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