View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14151_high_39 (Length: 247)

Name: NF14151_high_39
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14151_high_39
NF14151_high_39
[»] chr6 (12 HSPs)
chr6 (1-247)||(6403018-6403264)
chr6 (1-130)||(6432319-6432448)
chr6 (134-207)||(6602961-6603034)
chr6 (145-183)||(6432442-6432480)
chr6 (140-181)||(19632712-19632753)
chr6 (133-177)||(14820959-14821003)
chr6 (145-178)||(6410287-6410320)
chr6 (145-178)||(6416247-6416280)
chr6 (145-177)||(6395145-6395177)
chr6 (1-29)||(6594519-6594547)
chr6 (1-29)||(7119315-7119343)
chr6 (1-29)||(7131793-7131821)
[»] chr7 (5 HSPs)
chr7 (145-210)||(10614874-10614939)
chr7 (145-210)||(10167427-10167492)
chr7 (145-210)||(10169883-10169948)
chr7 (145-210)||(10177408-10177473)
chr7 (134-178)||(15091936-15091980)
[»] chr5 (1 HSPs)
chr5 (9-122)||(20477902-20478015)
[»] chr1 (3 HSPs)
chr1 (148-210)||(19468252-19468314)
chr1 (58-116)||(19468325-19468383)
chr1 (135-210)||(9581342-9581417)
[»] chr3 (3 HSPs)
chr3 (147-208)||(51764195-51764256)
chr3 (58-112)||(51764270-51764324)
chr3 (145-178)||(13470517-13470550)
[»] chr4 (1 HSPs)
chr4 (149-201)||(21834140-21834192)


Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 6403018 - 6403264
Alignment:
Q  1 cttaaaacttgacaaataccttcagatatacgatcacaccaacgcaattcaagatgttgcaaactgggaaaaatggaagcaaaacttatgatgctttcat 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6403018 cttaaaacttgacaaataccttcagatatacgatcgcaccaacgcaattcaagatgttgcaaactgggaaaaatggaagcaaaacttatgatgctttcat 6403117  T
Q  101 cactcaaccatgaattatgaccaaaatagatagaattgtgaccaaaatagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6403118 cactcaaccatgaattatgaccaaaatagatagaattgtgaccaaaatagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaatt 6403217  T
Q  201 ctctacactcnnnnnnnnaatacttgtgtgttccattttgatttcac 247  Q
    ||||||||||        |||||||||||||||||||||||||||||    
T  6403218 ctctacactcttttttttaatacttgtgtgttccattttgatttcac 6403264  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 6432319 - 6432448
Alignment:
Q  1 cttaaaacttgacaaataccttcagatatacgatcacaccaacgcaattcaagatgttgcaaactgggaaaaatggaagcaaaacttatgatgctttcat 100  Q
    ||||||||||||||||||||||||  |||||||| |||||||||||| ||||||||||||||| |||| ||||||||||||||  ||||||| |||||||    
T  6432319 cttaaaacttgacaaataccttcatttatacgatgacaccaacgcaaatcaagatgttgcaaattggggaaaatggaagcaaacattatgatcctttcat 6432418  T
Q  101 cactcaaccatgaattatgaccaaaataga 130  Q
      || ||||||||||| ||||| |||||||    
T  6432419 tccttaaccatgaattgtgacccaaataga 6432448  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 6603034 - 6602961
Alignment:
Q  134 aattgtgaccaaaatagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaattctctaca 207  Q
    |||||| ||| ||||||||||||||||| |||||||||| |||||||||| ||| |||||||  ||||||||||    
T  6603034 aattgtcacctaaatagagagactttaattgagggtatataccaatatccatcatagaatcattattctctaca 6602961  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 6432442 - 6432480
Alignment:
Q  145 aaatagagagactttaactgagggtatacaccaatatcc 183  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  6432442 aaatagagagactttaactgagggtatacatcaatatcc 6432480  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 181
Target Start/End: Original strand, 19632712 - 19632753
Alignment:
Q  140 gaccaaaatagagagactttaactgagggtatacaccaatat 181  Q
    |||| ||||||||||||||||| |||||||||||||||||||    
T  19632712 gacccaaatagagagactttaattgagggtatacaccaatat 19632753  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 14820959 - 14821003
Alignment:
Q  133 gaattgtgaccaaaatagagagactttaactgagggtatacacca 177  Q
    ||||||||||| |||||||||||||| || |||||||||||||||    
T  14820959 gaattgtgacccaaatagagagacttcaattgagggtatacacca 14821003  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 6410287 - 6410320
Alignment:
Q  145 aaatagagagactttaactgagggtatacaccaa 178  Q
    ||||||||||||||||| ||||||||||||||||    
T  6410287 aaatagagagactttaattgagggtatacaccaa 6410320  T

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Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Original strand, 6416247 - 6416280
Alignment:
Q  145 aaatagagagactttaactgagggtatacaccaa 178  Q
    ||||||||||||||||| ||||||||||||||||    
T  6416247 aaatagagagactttaattgagggtatacaccaa 6416280  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 177
Target Start/End: Original strand, 6395145 - 6395177
Alignment:
Q  145 aaatagagagactttaactgagggtatacacca 177  Q
    ||||||||||| |||||||||||||||||||||    
T  6395145 aaatagagagagtttaactgagggtatacacca 6395177  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 6594547 - 6594519
Alignment:
Q  1 cttaaaacttgacaaataccttcagatat 29  Q
    |||||||||||||||||||||||||||||    
T  6594547 cttaaaacttgacaaataccttcagatat 6594519  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7119315 - 7119343
Alignment:
Q  1 cttaaaacttgacaaataccttcagatat 29  Q
    |||||||||||||||||||||||||||||    
T  7119315 cttaaaacttgacaaataccttcagatat 7119343  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7131793 - 7131821
Alignment:
Q  1 cttaaaacttgacaaataccttcagatat 29  Q
    |||||||||||||||||||||||||||||    
T  7131793 cttaaaacttgacaaataccttcagatat 7131821  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 10614874 - 10614939
Alignment:
Q  145 aaatagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaattctctacactc 210  Q
    ||||||||||||||||| ||||||||||||||||  |||| ||| |||||||||||||||||||||    
T  10614874 aaatagagagactttaattgagggtatacaccaaactccgccaatgaatcagaattctctacactc 10614939  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 10167492 - 10167427
Alignment:
Q  145 aaatagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaattctctacactc 210  Q
    |||||||||||||| || |||||||||||||||| ||||| ||||||||||||||| |||| ||||    
T  10167492 aaatagagagacttcaattgagggtatacaccaaaatccggcaaagaatcagaattgtctaaactc 10167427  T

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Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 10169948 - 10169883
Alignment:
Q  145 aaatagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaattctctacactc 210  Q
    |||||||||||||| || |||||||||||||||| ||||| ||||||||||||||| |||| ||||    
T  10169948 aaatagagagacttcaattgagggtatacaccaaaatccggcaaagaatcagaattgtctaaactc 10169883  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 210
Target Start/End: Complemental strand, 10177473 - 10177408
Alignment:
Q  145 aaatagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaattctctacactc 210  Q
    |||||||||||||| || |||||||||||||||| ||||| ||||||||||||||| |||| ||||    
T  10177473 aaatagagagacttcaattgagggtatacaccaaaatccggcaaagaatcagaattgtctaaactc 10177408  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 15091980 - 15091936
Alignment:
Q  134 aattgtgaccaaaatagagagactttaactgagggtatacaccaa 178  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||    
T  15091980 aattgtgagccaaatagagagactttaattgagggtatacaccaa 15091936  T

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Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 20478015 - 20477902
Alignment:
Q  9 ttgacaaataccttcagatatacgatcacaccaacgcaattcaagatgttgcaaactgggaaaaatggaagcaaaacttatgatgctttcatcactcaac 108  Q
    |||||||||| |||||||||||||||  |||||| | || ||||||||||||||| |||| || || ||||||||  |||| ||  |||||||||| |||    
T  20478015 ttgacaaatatcttcagatatacgattgcaccaaggaaaatcaagatgttgcaaattggggaacatagaagcaaatattattattatttcatcacttaac 20477916  T
Q  109 catgaattatgacc 122  Q
    |||| |||||||||    
T  20477915 catggattatgacc 20477902  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 19468314 - 19468252
Alignment:
Q  148 tagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaattctctacactc 210  Q
    |||||| ||||||| |||||| ||||||||| ||||| |||||||||||||||||||||||||    
T  19468314 tagagatactttaattgagggaatacaccaaaatccggcaaagaatcagaattctctacactc 19468252  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 19468383 - 19468325
Alignment:
Q  58 tgcaaactgggaaaaatggaagcaaaacttatgatgctttcatcactcaaccatgaatt 116  Q
    |||||| |||||||||||||||||||  |||||||| ||||||| || |||||||||||    
T  19468383 tgcaaattgggaaaaatggaagcaaacattatgatgttttcatcgcttaaccatgaatt 19468325  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 210
Target Start/End: Original strand, 9581342 - 9581417
Alignment:
Q  135 attgtgaccaaaatagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaattctctacactc 210  Q
    ||||||||| ||||  ||||||||||| ||||||  ||||||||||||| | ||||| | ||||||||| ||||||    
T  9581342 attgtgacccaaatcaagagactttaattgagggcttacaccaatatccttgaaagacttagaattctcgacactc 9581417  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 51764256 - 51764195
Alignment:
Q  147 atagagagactttaactgagggtatacaccaatatccgtcaaagaatcagaattctctacac 208  Q
    ||||||||||||||| ||||||||||||||||  |||  |||||||||||||||||||||||    
T  51764256 atagagagactttaattgagggtatacaccaaagtccaccaaagaatcagaattctctacac 51764195  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 112
Target Start/End: Complemental strand, 51764324 - 51764270
Alignment:
Q  58 tgcaaactgggaaaaatggaagcaaaacttatgatgctttcatcactcaaccatg 112  Q
    |||||| |||| ||||||||||||||  ||||||||||||||||||| |||||||    
T  51764324 tgcaaattggggaaaatggaagcaaacattatgatgctttcatcacttaaccatg 51764270  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 178
Target Start/End: Complemental strand, 13470550 - 13470517
Alignment:
Q  145 aaatagagagactttaactgagggtatacaccaa 178  Q
    ||||||||||||||||| ||||||||||||||||    
T  13470550 aaatagagagactttaattgagggtatacaccaa 13470517  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 21834192 - 21834140
Alignment:
Q  149 agagagactttaactgagggtatacaccaatatccgtcaaagaatcagaattc 201  Q
    ||||||||||||| |||||||| ||||||| ||||  |||||| |||||||||    
T  21834192 agagagactttaattgagggtacacaccaaaatccaccaaagattcagaattc 21834140  T

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