View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14151_high_40 (Length: 246)

Name: NF14151_high_40
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14151_high_40
NF14151_high_40
[»] chr1 (1 HSPs)
chr1 (6-231)||(52174553-52174778)
[»] chr7 (13 HSPs)
chr7 (11-231)||(31585173-31585396)
chr7 (15-231)||(31618040-31618256)
chr7 (11-231)||(31604432-31604652)
chr7 (15-231)||(31608027-31608246)
chr7 (18-231)||(31614314-31614527)
chr7 (15-231)||(31575767-31575986)
chr7 (18-231)||(31594830-31595043)
chr7 (11-231)||(31439259-31439479)
chr7 (15-223)||(31540792-31541000)
chr7 (15-231)||(31532166-31532385)
chr7 (15-231)||(31573076-31573292)
chr7 (18-231)||(33305391-33305601)
chr7 (102-226)||(21898516-21898640)
[»] scaffold0394 (1 HSPs)
scaffold0394 (15-206)||(1712-1903)
[»] chr4 (2 HSPs)
chr4 (15-226)||(15063611-15063822)
chr4 (97-156)||(29083727-29083786)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 6 - 231
Target Start/End: Complemental strand, 52174778 - 52174553
Alignment:
Q  6 cataggacgggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaa 105  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174778 cataagacgggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaa 52174679  T
Q  106 tgcaccatagactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatcctt 205  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52174678 tgcaccatagactcaccaaagtaatctttataaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatcctt 52174579  T
Q  206 ataaatccagtctggaaagtacattt 231  Q
    ||||||||||||||||||||||||||    
T  52174578 ataaatccagtctggaaagtacattt 52174553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 31585173 - 31585396
Alignment:
Q  11 gacgggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcac 110  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||    
T  31585173 gacgggctttggaggatatggcactgatgaaagtggtccttgcaacatttctattactttattcatcggtggtctgtccgatggattcgtttgaatgcac 31585272  T
Q  111 catagactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagag---tatttccttgctcaagatccttat 207  Q
    |||||||| |||| |||||||||||||||||| ||||||||||| || |||||||||||||||||| ||||||    ||| |||||||||||||||||||    
T  31585273 catagacttaccatagtaatctttctaaccatgtcattttcttcttcggagattgtcaaacaatttaaaagaggttcattaccttgctcaagatccttat 31585372  T
Q  208 aaatccagtctggaaagtacattt 231  Q
    ||||||| ||||||||||||||||    
T  31585373 aaatccaatctggaaagtacattt 31585396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 31618040 - 31618256
Alignment:
Q  15 ggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccata 114  Q
    ||||||||||||||||  || ||||||||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||    
T  31618040 ggctttggaggatatgataccgatgaaagtggtccttgcaacatttctattactttattcatcggtggtctatctgatggtttagtttgaatgcaccata 31618139  T
Q  115 gactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatcca 214  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||||||  |||||||| |||||||||| ||||||||||||||||||||||||||    
T  31618140 gactcaccaaagtaatctttctgatcatatcattttcttcctccgagattgttgaacaatttaaaagagtattcccttgctcaagatccttataaatcca 31618239  T
Q  215 gtctggaaagtacattt 231  Q
     ||||||||||||||||    
T  31618240 atctggaaagtacattt 31618256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 31604432 - 31604652
Alignment:
Q  11 gacgggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcac 110  Q
    ||||||||||||||||||||  | || ||||||||| |||| ||||||||||||||||||||||||| |||||||||| ||| |||| |||||||||| |    
T  31604432 gacgggctttggaggatatgatattgttgaaagtggtccttgcaacatttctattactttattcatcggtggtctatctgatagtttagtttgaatgcgc 31604531  T
Q  111 catagactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaa 210  Q
    || ||||||||||||||||||||||| |||||||||||||||||||| |||| |||| |||||||| |||||||||| ||||||||||||||||||||||    
T  31604532 cacagactcaccaaagtaatctttctgaccatatcattttcttcctccgagactgtcgaacaatttaaaagagtattaccttgctcaagatccttataaa 31604631  T
Q  211 tccagtctggaaagtacattt 231  Q
    |||| ||||||||||||||||    
T  31604632 tccaatctggaaagtacattt 31604652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 31608027 - 31608246
Alignment:
Q  15 ggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccata 114  Q
    |||||||||||||||| ||||||||| || || |||| ||||||||||||||||||||||||  |||||||||| ||||| |||||||||||||||||||    
T  31608027 ggctttggaggatatgacactgatgacagcggtccttgcaacatttctattactttattcattggtggtctatctgatggattcgtttgaatgcaccata 31608126  T
Q  115 gactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagta---tttccttgctcaagatccttataaat 211  Q
    ||||||||| |||||||||||||||||||||||||||||||  |||||||||||| | |||| ||| ||||   || |||||||||||||||||||||||    
T  31608127 gactcaccatagtaatctttctaaccatatcattttcttccgttgagattgtcaacccatttaaaacagtatggttaccttgctcaagatccttataaat 31608226  T
Q  212 ccagtctggaaagtacattt 231  Q
    ||||||||||||||||||||    
T  31608227 ccagtctggaaagtacattt 31608246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 31614314 - 31614527
Alignment:
Q  18 tttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccatagac 117  Q
    ||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||  ||||||| |||||||||||||| | ||    
T  31614314 tttggaggatatgacaccgatgaaagtggtccttgcaacatttctattactttattcatcggtggtctgtctaatggtttagtttgaatgcaccaaacac 31614413  T
Q  118 tcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatccagtc 217  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||   ||||||||||| |||||||||||| ||    
T  31614414 tcaccaaagtgatctttctaatcatatcattttcttcctctgagattgtcaaacaatttaaaagagtgttattttgctcaagattcttataaatccaatc 31614513  T
Q  218 tggaaagtacattt 231  Q
    ||||||||||||||    
T  31614514 tggaaagtacattt 31614527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 31575767 - 31575986
Alignment:
Q  15 ggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccata 114  Q
    |||||||||||||||| ||| || |||||||| |||| ||||||||||||||||||||||||| |||| || ||  ||||||| |||||||| |||||||    
T  31575767 ggctttggaggatatgacaccgaggaaagtggtccttgcaacatttctattactttattcatcggtggcctgtctaatggtttggtttgaatacaccata 31575866  T
Q  115 gactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaag---agtatttccttgctcaagatccttataaat 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   ||||| ||| ||  ||||   | |||| |||||||||||||||||||||||    
T  31575867 gactcaccaaagtaatctttctaaccatatcattttcttcctctgacgatgtcatacagttaaaaaggttattattaccttgctcaagatccttataaat 31575966  T
Q  212 ccagtctggaaagtacattt 231  Q
    ||| |||||||| |||||||    
T  31575967 ccaatctggaaaatacattt 31575986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 18 - 231
Target Start/End: Original strand, 31594830 - 31595043
Alignment:
Q  18 tttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccatagac 117  Q
    ||||||||| |||  || |||||||| || ||||  | |||||| ||||||||||||||  ||||||||||  |||| || ||||||||||||||||| |    
T  31594830 tttggaggaaatgtgaccgatgaaagcggtccttgtagcatttcaattactttattcattggtggtctatctaatggatttgtttgaatgcaccataggc 31594929  T
Q  118 tcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatccagtc 217  Q
    |||||| |||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||  ||| |||||||||||||||||||||||||||||    
T  31594930 tcaccatagtaatctttttaaccatatcattttcttcctctgaaattgtcaaagaatttaaaagatcattaccttgctcaagatccttataaatccagtc 31595029  T
Q  218 tggaaagtacattt 231  Q
    ||||||||||||||    
T  31595030 tggaaagtacattt 31595043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 231
Target Start/End: Complemental strand, 31439479 - 31439259
Alignment:
Q  11 gacgggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcac 110  Q
    |||||||||||||||||| || | |||   |||||| ||||  | |||||||||||||||| ||||   |||||| || ||||| || ||||||||||||    
T  31439479 gacgggctttggaggatacggtattgaatgaagtggtccttgtagcatttctattactttactcattgatggtctctctgatggatttgtttgaatgcac 31439380  T
Q  111 catagactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaa 210  Q
    |||| |||||||| |||||||||  | || |||||||||||||| || |||||||| |||  ||||||||||||||| |||||||||||||||||||| |    
T  31439379 cataaactcaccatagtaatcttctttacgatatcattttcttcttcggagattgttaaattatttgaaagagtattaccttgctcaagatccttatata 31439280  T
Q  211 tccagtctggaaagtacattt 231  Q
    |||| || |||||||||||||    
T  31439279 tccaatccggaaagtacattt 31439259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 31540792 - 31541000
Alignment:
Q  15 ggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccata 114  Q
    |||||||||||||||||||| ||   |||||| ||||  | |||||||| ||||||| ||||   ||||||||| | ||| || ||||||||||||||||    
T  31540792 ggctttggaggatatggcaccgactgaagtggtccttgtagcatttctaatactttactcattgatggtctatcggctggatttgtttgaatgcaccata 31540891  T
Q  115 gactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatcca 214  Q
    ||||||||| ||||||| |||| ||||||||||||||||||| |||| |||  |||||||| | |||  ||||  |||||||||||||||||||||||||    
T  31540892 gactcaccatagtaatcattcttaccatatcattttcttcctttgagtttgctaaacaattagcaaggttattagcttgctcaagatccttataaatcca 31540991  T
Q  215 gtctggaaa 223  Q
     ||||||||    
T  31540992 atctggaaa 31541000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 15 - 231
Target Start/End: Original strand, 31532166 - 31532385
Alignment:
Q  15 ggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccata 114  Q
    |||||||||||||||||||||||   |||||| ||||  | ||||||| |||||||| ||||   ||||||||| ||||| || ||||||||||||||||    
T  31532166 ggctttggaggatatggcactgactgaagtggtccttgtagcatttctgttactttactcattgatggtctatcggatgggtttgtttgaatgcaccata 31532265  T
Q  115 gactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtc-aaacaatttgaaag---agtatttccttgctcaagatccttataaa 210  Q
     |||||||| |||||||||||| ||||||||||||||||||||||| ||| || ||| ||||   |||   | |||| ||||| ||||||||||||||||    
T  31532266 aactcaccatagtaatctttctcaccatatcattttcttcctctga-attttctaaataattcacaaggttattattaccttgttcaagatccttataaa 31532364  T
Q  211 tccagtctggaaagtacattt 231  Q
    ||||||| |||||||||||||    
T  31532365 tccagtcaggaaagtacattt 31532385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 31573292 - 31573076
Alignment:
Q  15 ggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccata 114  Q
    ||||||||||| |||||||||||   |||||| ||||  | |||||||| ||||||| |||||  |||||||||  |||| |||||||||||||||||||    
T  31573292 ggctttggagggtatggcactgaatcaagtggtccttgtagcatttctaatactttactcatcgatggtctatctaatgggttcgtttgaatgcaccata 31573193  T
Q  115 gactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatcca 214  Q
    |||| |||| ||| | |||||| ||||||||| |||||||||| ||| |||  |||| |||   ||   |||| | | |||||||||| |||||||||||    
T  31573192 gactaaccatagttaactttcttaccatatcagtttcttcctcggagtttgctaaaccattcacaaagttattacttagctcaagatcattataaatcca 31573093  T
Q  215 gtctggaaagtacattt 231  Q
     ||||||||||||||||    
T  31573092 atctggaaagtacattt 31573076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 231
Target Start/End: Complemental strand, 33305601 - 33305391
Alignment:
Q  18 tttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccatagac 117  Q
    ||||| ||||||||||||||   |||||| ||||  | ||||||||| |||||| ||||   ||||||||| ||||| ||||||||||||||||| ||||    
T  33305601 tttgggggatatggcactgacccaagtggtccttgaagcatttctatcactttactcattgatggtctatctgatggattcgtttgaatgcaccaaagac 33305502  T
Q  118 tcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatccagtc 217  Q
    | | || ||||||||||||  |||||||||||||||| |||||| |||   |||||||   |||  |||| | | |||||||||||||||||||||| ||    
T  33305501 taatcatagtaatctttcttgccatatcattttcttcttctgagtttgcagaacaatt---aaggttattacttagctcaagatccttataaatccaatc 33305405  T
Q  218 tggaaagtacattt 231  Q
    || |||||||||||    
T  33305404 tgaaaagtacattt 33305391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 226
Target Start/End: Complemental strand, 21898640 - 21898516
Alignment:
Q  102 tgaatgcaccatagactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagat 201  Q
    |||||||||||||||| ||||| |||||||||||  |  |||||||| ||||||||||| |||   ||| ||||   |||  | || ||||| | |||||    
T  21898640 tgaatgcaccatagacacaccatagtaatctttcgtattatatcattctcttcctctgaaatttcaaaagaattcacaaggttgttaccttgttgaagat 21898541  T
Q  202 ccttataaatccagtctggaaagta 226  Q
    | ||||| |||||||||||||||||    
T  21898540 cattatagatccagtctggaaagta 21898516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 1712 - 1903
Alignment:
Q  15 ggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccata 114  Q
    ||||||||||||||| | | |||   ||||||||||| || |||||||||||||||| ||||   ||| ||||| ||||| ||||||||||| ||||| |    
T  1712 ggctttggaggatattgtattgaatgaagtggcccttgcagcatttctattactttactcattgatggactatctgatggattcgtttgaatacaccaca 1811  T
Q  115 gactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatcctta 206  Q
     || ||||| |||||||||  | | ||||||||||||||| |||||||||| || || |||| |||||| ||| ||||||||||||||||||    
T  1812 aacccaccatagtaatcttctttagcatatcattttcttcttctgagattgccatactatttaaaagagaattaccttgctcaagatcctta 1903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 15063822 - 15063611
Alignment:
Q  15 ggctttggaggatatggcactgatgaaagtggcccttccaacatttctattactttattcatctgtggtctatccgatggtttcgtttgaatgcaccata 114  Q
    ||||||||||||||| | | |||   ||||||||||| || |||||||||||||||| ||||   |||||| || ||||| ||||||||||| ||||| |    
T  15063822 ggctttggaggatattgtattgaatgaagtggcccttgcagcatttctattactttactcattgatggtctgtctgatggattcgtttgaatacaccaca 15063723  T
Q  115 gactcaccaaagtaatctttctaaccatatcattttcttcctctgagattgtcaaacaatttgaaagagtatttccttgctcaagatccttataaatcca 214  Q
     |  ||||| |||||||||  | | ||||||||||||||| |||||||||| ||||| |||| |||| | ||| |||||||||||||||||| | |||||    
T  15063722 aagccaccatagtaatcttctttagcatatcattttcttcttctgagattgccaaactatttaaaagggaattaccttgctcaagatccttaaatatcca 15063623  T
Q  215 gtctggaaagta 226  Q
     || ||||||||    
T  15063622 atccggaaagta 15063611  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 97 - 156
Target Start/End: Original strand, 29083727 - 29083786
Alignment:
Q  97 tcgtttgaatgcaccatagactcaccaaagtaatctttctaaccatatcattttcttcct 156  Q
    ||||||||||| || ||||||||| ||  ||||||| ||| |||||||||||||||||||    
T  29083727 tcgtttgaatgtacgatagactcatcattgtaatctatctcaccatatcattttcttcct 29083786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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