View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_high_41 (Length: 245)
Name: NF14151_high_41
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 47247946 - 47248148
Alignment:
| Q |
20 |
cagagcataggctgtattaaaaagtgacaacttgaacacagtgaaataggcatagccattagtagtacaagcggattatcatcaaaagttaacaagcagt |
119 |
Q |
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| T |
47247946 |
cagagcataggctgta----aaagtgacaacttgaacacagtgaaataggcatagccattagtagtacaagcggattatcatcaaaagttaacaagcagt |
47248041 |
T |
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| Q |
120 |
cagcatcagtgattggattactatatataccaagatccagtccagcagcatgtggccatcagtaattgattgtcaaaagccgcataacccccaaaatttg |
219 |
Q |
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| T |
47248042 |
cagcatcagtgattggattactatatataccaagatccagtccagcagcatgtggccatcagtaattgattgtcaaaagccgcataacccccaaaatttg |
47248141 |
T |
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| Q |
220 |
ataatat |
226 |
Q |
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||||||| |
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| T |
47248142 |
ataatat |
47248148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 47241571 - 47241607
Alignment:
| Q |
23 |
agcataggctgtattaaaaagtgacaacttgaacaca |
59 |
Q |
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|||||||| |||||||| ||||||||||||||||||| |
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| T |
47241571 |
agcataggttgtattaacaagtgacaacttgaacaca |
47241607 |
T |
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