View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14151_high_48 (Length: 215)

Name: NF14151_high_48
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14151_high_48
NF14151_high_48
[»] chr2 (11 HSPs)
chr2 (1-215)||(14533670-14533884)
chr2 (75-208)||(15004318-15004451)
chr2 (66-215)||(14519891-14520040)
chr2 (63-215)||(31968897-31969049)
chr2 (63-215)||(15012980-15013132)
chr2 (20-208)||(15007527-15007715)
chr2 (63-208)||(14512048-14512193)
chr2 (63-205)||(15019472-15019614)
chr2 (20-208)||(14528455-14528643)
chr2 (20-208)||(14542681-14542869)
chr2 (75-198)||(14546883-14547006)


Alignment Details
Target: chr2 (Bit Score: 171; Significance: 5e-92; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 14533670 - 14533884
Alignment:
Q  1 acaaccctcttttgcaccaattcccaatttcacccagaagtttctgcaccataacagccacttcagaatcaaacacacacccattcgctgtatcatacct 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  14533670 acaaccctcttttgcaccaattcccaatttcacccagacgtttctgcaccataacagccacttcagaatcaaacacacatccattctctgtatcatacct 14533769  T
Q  101 tgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcacc 200  Q
      ||||||||||||| ||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  14533770 catcaacaattttggattctcacatgaatctgctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatgctgattctgttatcacc 14533869  T
Q  201 ttctttcagaaccat 215  Q
    |||||||| ||||||    
T  14533870 ttctttcaaaaccat 14533884  T

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Target: chr2; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 75 - 208
Target Start/End: Complemental strand, 15004451 - 15004318
Alignment:
Q  75 acacacccattcgctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccc 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  15004451 acacacccattcgctgtatcataccttgtcaacaattttggtttctcaactgaatcaactctcaaagctttcaacaacaagcaggttcgtttcaataccc 15004352  T
Q  175 cagataatcctgattctgttatcaccttctttca 208  Q
    ||||||||||||||||||||||||||||||||||    
T  15004351 cagataatcctgattctgttatcaccttctttca 15004318  T

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Target: chr2; HSP #3
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 66 - 215
Target Start/End: Original strand, 14519891 - 14520040
Alignment:
Q  66 gaatcaaacacacacccattcgctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtt 165  Q
    |||||| ||||||| ||||| |||||||||||||| |||||||| ||||||||||||  |||||| ||||||||||||||||||||||  ||||||||||    
T  14519891 gaatcagacacacaaccatttgctgtatcatacctcgtcaacaaatttggtttctcacatgaatcggctctcaaagctttcaacaacagacaggttcgtt 14519990  T
Q  166 tcaataccccagataatcctgattctgttatcaccttctttcagaaccat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14519991 tcaataccccagataatcctgattctgttatcaccttctttcaaaaccat 14520040  T

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Target: chr2; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 31968897 - 31969049
Alignment:
Q  63 tcagaatcaaacacacacccattcgctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttc 162  Q
    |||||||||| |||||| || || |||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||    
T  31968897 tcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacctcaagcaggttc 31968996  T
Q  163 gtttcaataccccagataatcctgattctgttatcaccttctttcagaaccat 215  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  31968997 gtttcaatacctcagataatcctgattctgttatcaccttctttcaaaaccat 31969049  T

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Target: chr2; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 63 - 215
Target Start/End: Original strand, 15012980 - 15013132
Alignment:
Q  63 tcagaatcaaacacacacccattcgctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttc 162  Q
    |||||||||| |||||| || || |||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||  || ||| ||||    
T  15012980 tcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacctcaggcaagttc 15013079  T
Q  163 gtttcaataccccagataatcctgattctgttatcaccttctttcagaaccat 215  Q
    ||||||||||||||||||||||||| || || |||| ||||||||| ||||||    
T  15013080 gtttcaataccccagataatcctgactcagtcatcaacttctttcaaaaccat 15013132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 15007527 - 15007715
Alignment:
Q  20 attcccaatttcacccagaagtttctgcaccataacagccacttcagaatcaaacacacacccattcgctgtatcataccttgtcaacaattttggtttc 119  Q
    |||||||||||||| || ||| ||| |||||| |||| | || |||||||| ||||| ||||||||||||| ||| |||||  || ||||||||||||||    
T  15007527 attcccaatttcactcacaagattcagcaccacaacatcaacatcagaatccaacactcacccattcgctgcatcctacctcatcgacaattttggtttc 15007626  T
Q  120 tcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttca 208  Q
    ||| || |||| ||||| ||||||||||||||||| |||||||||||||||||||  || || ||| |||| ||| |||||||||||||    
T  15007627 tcacctcaatctgctcttaaagctttcaacaacaaacaggttcgtttcaatacccttgaaaagcctaattcagttctcaccttctttca 15007715  T

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Target: chr2; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 14512048 - 14512193
Alignment:
Q  63 tcagaatcaaacacacacccattcgctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttc 162  Q
    |||||||||  |||||| |||||||||| ||| || ||  ||||||||||||||||| ||  |||||||||||||||| |||||||| ||||||| ||||    
T  14512048 tcagaatcagtcacacatccattcgctgcatcttatctcatcaacaattttggtttcacacatgaatcagctctcaaatctttcaactacaagcatgttc 14512147  T
Q  163 gtttcaataccccagataatcctgattctgttatcaccttctttca 208  Q
    ||||||||||| ||||||| |||||||| || ||||||||||||||    
T  14512148 gtttcaataccgcagataaacctgattcagtcatcaccttctttca 14512193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 15019472 - 15019614
Alignment:
Q  63 tcagaatcaaacacacacccattcgctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttc 162  Q
    |||||||||| |||||| || || |||||||| || ||| |||||||||||| ||||||||||||||||||||||||||||||||||  || ||| ||||    
T  15019472 tcagaatcaatcacacaaccttttgctgtatcttatcttatcaacaattttgatttctcaactgaatcagctctcaaagctttcaacctcaggcacgttc 15019571  T
Q  163 gtttcaataccccagataatcctgattctgttatcaccttctt 205  Q
    ||||||||||||||||||  ||||| || || |||| ||||||    
T  15019572 gtttcaataccccagataggcctgactcagtcatcaacttctt 15019614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 14528455 - 14528643
Alignment:
Q  20 attcccaatttcacccagaagtttctgcaccataacagccacttcagaatcaaacacacacccattcgctgtatcataccttgtcaacaattttggtttc 119  Q
    ||||||| |||||| || ||| |||||||||| |||| |    || ||||||  |||||| |||||||||| ||| || ||  ||||||||||||| |||    
T  14528455 attcccattttcactcacaagattctgcaccacaacatctcaatctgaatcagtcacacatccattcgctgcatcttatctcatcaacaattttgggttc 14528554  T
Q  120 tcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttca 208  Q
    |||  |||||| ||||||||||||||||||  |||||| ||||||||||||||| ||||||| |||||||| || ||||||||||||||    
T  14528555 tcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcaccttctttca 14528643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 14542681 - 14542869
Alignment:
Q  20 attcccaatttcacccagaagtttctgcaccataacagccacttcagaatcaaacacacacccattcgctgtatcataccttgtcaacaattttggtttc 119  Q
    ||||| |||||||| || ||| |||||||||| |||| |    || ||||||  |||||| |||||||||| ||| || ||  ||||||||||||| |||    
T  14542681 attccaaatttcactcacaagattctgcaccacaacatctcaatctgaatcagtcacacatccattcgctgcatcttatctcatcaacaattttgggttc 14542780  T
Q  120 tcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccccagataatcctgattctgttatcaccttctttca 208  Q
    |||  |||||| ||||||||||||||||||  |||||| ||||||||||||||| ||||||| |||||||| || ||||||||||||||    
T  14542781 tcacatgaatctgctctcaaagctttcaacctcaagcaagttcgtttcaataccgcagataaacctgattcagtcatcaccttctttca 14542869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 75 - 198
Target Start/End: Original strand, 14546883 - 14547006
Alignment:
Q  75 acacacccattcgctgtatcataccttgtcaacaattttggtttctcaactgaatcagctctcaaagctttcaacaacaagcaggttcgtttcaataccc 174  Q
    ||||||||||||||||||||||||||| |||||||||| ||||||||| ||  ||| |||||||| |||||||||||||| ||||||| ||||||  ||     
T  14546883 acacacccattcgctgtatcataccttatcaacaatttcggtttctcacctctatctgctctcaaggctttcaacaacaatcaggttcttttcaaatccg 14546982  T
Q  175 cagataatcctgattctgttatca 198  Q
    |||| |||||| |||| |||||||    
T  14546983 cagaaaatcctaattcagttatca 14547006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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