View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_high_53 (Length: 201)
Name: NF14151_high_53
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_high_53 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 36867178 - 36867378
Alignment:
| Q |
1 |
cagctgaagaatagttctcaattccagaaatggaagatttaagtacatgacaaatatcccaaagccttgagctttcatccatgtattcatccaaccattt |
100 |
Q |
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| T |
36867178 |
cagctgaagaatagttctcaattccagaaatggaagatttaagtacatgacaaatatcccaaagccttgagctttcatccatgtattcatccaaccattt |
36867277 |
T |
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| Q |
101 |
ccccccaattggtaaacaaaggttttgtaccaaaagtgttaactgagaatgaaaggattgtagatatgaaagcacctcagaaatgaattggatagacatg |
200 |
Q |
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| T |
36867278 |
ccctccaattggtaaacaaaggttttgtaccaaaagtgttaactgagaatgaaaggattgtagagatgaaagcacctcagaaatgaattggatagacatg |
36867377 |
T |
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| Q |
201 |
a |
201 |
Q |
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| T |
36867378 |
a |
36867378 |
T |
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Target: chr2 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 642133 - 642292
Alignment:
| Q |
10 |
aatagttctcaattccagaaatggaagatttaagtacatgacaaatatcccaaagccttgagctttcatccatgtattcatccaaccatttccccccaat |
109 |
Q |
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| T |
642133 |
aatagttatcaattccagaaatggcagatttgagtacatggcaagaatcccaaagtcttgagctttcatccatgtattcatcaagccattttcctccaac |
642232 |
T |
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| Q |
110 |
tggtaaacaaaggttttgtaccaaaagtgttaactgagaatgaaaggattgtagatatga |
169 |
Q |
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| T |
642233 |
aggtaacctaagcttgcggaccaaaagggtgagttgggaatggaaggattgtagagatga |
642292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 33137763 - 33137845
Alignment:
| Q |
18 |
tcaattccagaaatggaagatttaagtacatgacaaatatcccaaagccttgagctttcatccatgtattcatccaaccattt |
100 |
Q |
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| T |
33137763 |
tcaattcctgaaatgccagacttaagaacatgacaagcttcccaaagcttagaactttcatccatgtattcatcaagccattt |
33137845 |
T |
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