View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_12 (Length: 502)
Name: NF14151_low_12
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 117 - 489
Target Start/End: Complemental strand, 54473451 - 54473077
Alignment:
| Q |
117 |
tgaagcaaccaattgtggtttaaacatgggttgttgatgtggtttctagaaaaaccaaacacacacctagtgaattag--tttcaaatatgtagcagtta |
214 |
Q |
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| T |
54473451 |
tgaagcaaccaattgtggcttaagcatgggttgttgatgtggtttctagaaaaaccaaacacacacctagtgaattagagtttcaaatatgtagcagtta |
54473352 |
T |
|
| Q |
215 |
ccctttgcagagatacgtcggcatccataagataacattcaagaatcaaatgatttgactctcgtactcaaactcaaagtaacaaaattgcaggacattt |
314 |
Q |
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| T |
54473351 |
ccctttgcagagatacatcggcatccataagataaaattcaagaatcaaatgactagactctcgtactcaaactcaaagtaacaaaattgcaggacattt |
54473252 |
T |
|
| Q |
315 |
attatccctaaaaacttttttatactgatatgaatcatgataatgtggcgtccatacagcattaagcaaatcatcatcgtacaagagatgcaaaatcctc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54473251 |
attatccctaaaaacttttttatactgatatgaatcatgataatgtggcgtccatacagcattaagcaaatcatcatcgtacaagagatgcaaaatcctc |
54473152 |
T |
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| Q |
415 |
ttatgcaagcaaattatcttacacaggtgagagtgaagctgtgtaactggttcaaaaaagaaaatcatgttgtct |
489 |
Q |
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| T |
54473151 |
ttatgcaagcaaattatcttacacaggtgagagtgaagctgtgtaactggttcaaaaaagaaaatcatgttgtct |
54473077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 43779414 - 43779462
Alignment:
| Q |
65 |
gtgcggtggaacaagtattcttgcgtcccaa-gaaaaaattgtcgtgat |
112 |
Q |
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| T |
43779414 |
gtgcgatggaacaagttttcttgcgtcccaaggcaaaaattgtcgtgat |
43779462 |
T |
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