View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14151_low_13 (Length: 484)
Name: NF14151_low_13
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_13 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 388; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 4 - 471
Target Start/End: Original strand, 29612491 - 29612958
Alignment:
| Q |
4 |
tctctctgtatgtggtgttttccttggctatctttagcaccatattgtatgtaaagcagctctcaccctccacaaaatatgctcaactaaaaacttacat |
103 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29612491 |
tctctctgtatggagtgttttccttggctatctttaccaccatattgtttgtaaagcagttctcaccatccacaaaatatgctcaactaaaaacttacat |
29612590 |
T |
|
| Q |
104 |
aagctttgcagttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagtttcgaatgctgca |
203 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29612591 |
aagctttgcagttttgatgatcatctcagtgtactcattctattacgacaaggctgtgaacggtaaacctgaaatattgagcctagtttcgaatgctgca |
29612690 |
T |
|
| Q |
204 |
tttgctttgatgtcgttaagcttgtcaaaactgatcaagtttggatttgaaataggcatatttgcttatttcctaggttgcctagccgttcaactgtgga |
303 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
29612691 |
tttgctttgatgtctttaagcttgtcaaaactgatcaagtttggatttgaaataggcatatttgcttatttcctaggttgccttgtggttcaactgtgga |
29612790 |
T |
|
| Q |
304 |
ccatcaattggatgctgatattggttgctataatctttggttgtccactctttgttatgcattcgtcttcacattcccaagatgaggtcgacacggatca |
403 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29612791 |
ccatcaattggatgctgattttggttgctataatctttggttgtccactctttgttatgcattcgtcttcacattcccaagatgaggtcgacacggatca |
29612890 |
T |
|
| Q |
404 |
aataattgatgaatcttcaggttctgatccagaggttggtaatgtaggtcaaccagatgttgatgttg |
471 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29612891 |
aattattgatgaatcttcaggttctgatccagaggttggtaatgtaggtcaaccagatgttgatgttg |
29612958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 29524706 - 29525163
Alignment:
| Q |
8 |
tctgtatgtggtgttttccttggctatctttagcaccatattgtatgtaaagcagctctcaccctccacaaaatatgctcaactaaaaacttacataagc |
107 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||| |||| |||||||| | ||||| | |||||| ||||| ||| ||||| | |||| || |
|
|
| T |
29524706 |
tctgtatggggtgttttccttggttatctttactaccatgttgtttgtaaagccgttctcaacatccacacgatatggtcatataaaaccctacacgggc |
29524805 |
T |
|
| Q |
108 |
tttgcagttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagtttcgaatgctgcatttg |
207 |
Q |
| |
|
|| |||||||| |||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29524806 |
ttcacagttttgatgatcatctcagtgtactcattctattacgacaaggctgtgaacgggaaacctgaaatattgagtatagtttcgaatgctgcatttg |
29524905 |
T |
|
| Q |
208 |
ctttgatgtcgttaagcttgtcaaaactgatcaagtttggatttgaaataggcatatttgcttatttcctaggttgcctagccgttcaactgtggaccat |
307 |
Q |
| |
|
|||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29524906 |
ctttgacatccttaagcttgtccaaactgatcaggtttggatttgaaataggcatattttcttatttcctaggttgcctagcagttcaactgtggaccat |
29525005 |
T |
|
| Q |
308 |
caattggatgctgatattggttgctataatctttggttgtccactctttgttatgcattcgtcttcacattcccaagatgaggtcgacacggatcaaata |
407 |
Q |
| |
|
||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||||||||| |||| |||||| |||||||||| ||||||||| |
|
|
| T |
29525006 |
caattggatgctgatttcggttgctataatctttggttgcccgctctttgttatgcattcgtcttcgcattaccaagaagaggtcgacagggatcaaatt |
29525105 |
T |
|
| Q |
408 |
attgatgaatcttcaggttctgatccagaggttggtaatgtaggtcaaccagatgttg |
465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
|
|
| T |
29525106 |
attgatgaatcttcaggttctgatccagaggttggtaatacagttcaaccagatgttg |
29525163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 114 - 372
Target Start/End: Complemental strand, 29475191 - 29474933
Alignment:
| Q |
114 |
gttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagtttcgaatgctgcatttgctttga |
213 |
Q |
| |
|
|||||| ||||||||||||||||| |||| | || ||| ||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
29475191 |
gttttgatgatcatctcagtgtacgcatttttctatgaccgagctgtgaatggaaaacctgaaatattgagtatagtttcaaatgctgcatttgctttgg |
29475092 |
T |
|
| Q |
214 |
tgtcgttaagcttgtcaaaactgatcaagtttggatttgaaataggcatatttgcttatttcctaggttgcctagccgttcaactgtggaccatcaattg |
313 |
Q |
| |
|
| || ||||| || |||||||| || ||||| ||||| || || |||| |||||||| |||||||| | | |||||||||| |||||||| || |
|
|
| T |
29475091 |
tttcattaagtttacacaaactgattaactttgggtttgagattggtgtattctcttatttcttaggttgctttacagttcaactgttaaccatcaactg |
29474992 |
T |
|
| Q |
314 |
gatgctgatattggttgctataatctttggttgtccactctttgttatgcattcgtctt |
372 |
Q |
| |
|
|||| | || || ||||| | ||||||||||||| || | ||||||||||||||||| |
|
|
| T |
29474991 |
gatgtttatttttgttgcacttttctttggttgtccgctttctgttatgcattcgtctt |
29474933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 80 - 361
Target Start/End: Complemental strand, 29526892 - 29526611
Alignment:
| Q |
80 |
atatgctcaactaaaaacttacataagctttgcagttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaata |
179 |
Q |
| |
|
||||| |||||| ||||||| || | ||||||||||||| |||||||||||||||| ||||||| ||||||| ||| ||||||| ||||| || ||| |
|
|
| T |
29526892 |
atatgttcaactcaaaacttgcacactctttgcagttttgatgatcatctcagtgtattcattcttctacgacagagctttgaatggaaaacccgacata |
29526793 |
T |
|
| Q |
180 |
ttgagtatagtttcgaatgctgcatttgctttgatgtcgttaagcttgtcaaaactgatcaagtttggatttgaaataggcatatttgcttatttcctag |
279 |
Q |
| |
|
||||| ||||||| || ||||||||| || || |||| ||||||||| ||||| | || ||||| ||||| || || || |||||||| ||| |
|
|
| T |
29526792 |
ctgagtgtagtttcaaacgctgcattttctatggtgtccttaagcttgcacaaactcactaactttgggtttgagattggtgggttctcttatttcttag |
29526693 |
T |
|
| Q |
280 |
gttgcctagccgttcaactgtggaccatcaattggatgctgatattggttgctataatctttggttgtccactctttgttat |
361 |
Q |
| |
|
||||| | | ||||||||| ||||||||| ||||| |||| || ||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
29526692 |
gttgctttacaattcaactgttgaccatcaactggatattgatttttgttgccataatctacggttgtctgctctttgttat |
29526611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 211
Target Start/End: Original strand, 28183733 - 28183848
Alignment:
| Q |
96 |
acttacataagctttgcagttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagtttcga |
195 |
Q |
| |
|
|||| ||||| ||||| |||||| |||| ||||||||||||||||||| || ||| |||| ||||||| |||||| | ||| ||||| || |||| | |
|
|
| T |
28183733 |
acttgcataacctttgtggttttgatgattatctcagtgtactcattcttctatgacgaagctgtgaatggaaaacctaacatactgagtgtaatttcaa |
28183832 |
T |
|
| Q |
196 |
atgctgcatttgcttt |
211 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28183833 |
atgctgcatttgcttt |
28183848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 227
Target Start/End: Complemental strand, 29528887 - 29528751
Alignment:
| Q |
91 |
taaaaacttacataagctttgcagttttgctgatcatctcagtgtactcattctattacgacaaagccctgaatgggaaacctgaaatattgagtatagt |
190 |
Q |
| |
|
||||||||| || || |||||| |||||| ||||||||| ||||||||||||| ||||||| ||| | ||||| |||||| | ||| | ||| |||| |
|
|
| T |
29528887 |
taaaaacttgcacaatctttgcggttttggtgatcatctaagtgtactcattcgtctacgacagagctgtcaatggaaaacctaacatacttagtgtagt |
29528788 |
T |
|
| Q |
191 |
ttcgaatgctgcatttgctttgatgtcgttaagcttg |
227 |
Q |
| |
|
||| || ||| | ||||||||| |||| ||||||||| |
|
|
| T |
29528787 |
ttcaaacgcttcgtttgctttggtgtcattaagcttg |
29528751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University