View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_21 (Length: 422)
Name: NF14151_low_21
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 20 - 410
Target Start/End: Original strand, 36401478 - 36401868
Alignment:
| Q |
20 |
atccattgtgatttgaatagtttattagttacggtctcatttgttggggcagactttttgaagcgcaaaccattcacaggcgaatggaatattgtagccc |
119 |
Q |
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| T |
36401478 |
atccattgtgatttgaatagtttattagttacggtctcatttgttggggcagactttttgaagcgcaaaccattcacaggcgaatggaatattgtagccc |
36401577 |
T |
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| Q |
120 |
caaccatcattgatatcaaagctagcatacttacaccaagtccttgtctaatattgtgaagcattttccccttcaagataagagcaatggtaaacaggtt |
219 |
Q |
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| T |
36401578 |
caaccatcattgatatcaaagctagcatacttacaccaagtccttgtctaatattgtgaagcattttccccttcaagataagagcaatggtaaacaggtt |
36401677 |
T |
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| Q |
220 |
gagattgaaaaatagtaaaagtaaaaaggtcttttattttggataatttaagagctacatgaagcatgaacattgtcacagaaaataaatgtgtataaat |
319 |
Q |
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| T |
36401678 |
gagattgaaaaatagtaagagtaaaaaggtcttttattttggataatttaagagctacatgaagcatgaacattgtcacagaaaataaatgtgtataaat |
36401777 |
T |
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| Q |
320 |
aaaaacatttgggaccaaaaataagttttcctcataatttaaaagctacatgaagcattagtgtttgactattacttttctcaccctatgc |
410 |
Q |
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| T |
36401778 |
aaaaacatttgggaccaaaaataagttttcctcataatttaaaagctacatgaagcattagtgtttgactattacttttctcaccttatgc |
36401868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 191
Target Start/End: Original strand, 36394901 - 36395072
Alignment:
| Q |
20 |
atccattgtgatttgaatagtttattagttacggtctcatttgttggggcagactttttgaagcgcaaaccattcacaggcgaatggaatattgtagccc |
119 |
Q |
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| T |
36394901 |
atccaatgtgattttaatattgtatttgttatcgtctcaattgttgtggtgggctttttgaagcgcaaatcatgcataggcgaacggaatactgtaaccc |
36395000 |
T |
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| Q |
120 |
caaccatcattgatatcaaagctagcatacttacaccaagtccttgtctaatattgtgaagcattttcccct |
191 |
Q |
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| T |
36395001 |
caaccatcactgatatcaaagctagcacacttaaacctagtcctttcctgatattgtggaatattttcccct |
36395072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 170
Target Start/End: Original strand, 36372993 - 36373077
Alignment:
| Q |
86 |
aaaccattcacaggcgaatggaatattgtagccccaaccatcattgatatcaaagctagcatacttacaccaagtccttgtctaa |
170 |
Q |
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| T |
36372993 |
aaacctttcacaggtgaagggaatattgtagctgctaccatcattgacatcaaatttagcatacttaaacccagtcattgtctaa |
36373077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 36377752 - 36377886
Alignment:
| Q |
20 |
atccattgtgatttgaatagtttattagttacggtctcatttgttggggcagactttttgaagcgcaaaccattcacaggcgaatggaatattgtagcc- |
118 |
Q |
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| T |
36377752 |
atccaatgtgcttttaataatttattagttatggtctcaattgtt-gcgcatattttttgaagcacaaaccatgcgtagacgaatggaatactatagtcc |
36377850 |
T |
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| Q |
119 |
---ccaaccatcattgatatcaaagctagcatactt |
151 |
Q |
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| T |
36377851 |
caaccaaccatcactgacatcaaagctatcatactt |
36377886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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