View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_25 (Length: 401)
Name: NF14151_low_25
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_25 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 286
Target Start/End: Original strand, 3361721 - 3361989
Alignment:
| Q |
16 |
atagagggagagaaagtataagaataaataccatatccacagtgaaagtaatcataatggcactcaagactctcagagtagttaccatcataggaaacta |
115 |
Q |
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| T |
3361721 |
atagagggagagaaagtataagaataaataccatatccacagtgaaagtaatcatagtggcactcaagactc--agagtagttaccatcataggaaacta |
3361818 |
T |
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| Q |
116 |
acaccagcaaagtacatgcaaaaagatataaactcatttatcatataagtataacaccaaaactgatatagataattaataaccaaagatgaggtaaaat |
215 |
Q |
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| T |
3361819 |
acaccagcaaagtacatgcaaaaagatataaactcatttatcatataagtataacaccaaaactgatatagataattaataaccaaagatgaggtaaaat |
3361918 |
T |
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| Q |
216 |
aagaaaccttgatcaaaagatgaactccatagattaaaagccatgtatgaaatgcaagtaactatttcctg |
286 |
Q |
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| T |
3361919 |
aagaaaccttgatcaaaagatgaactccatagattaaaagccatgtatgaaatgcaagtaactatttcctg |
3361989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 320 - 401
Target Start/End: Original strand, 3362023 - 3362104
Alignment:
| Q |
320 |
tcacgaatttatctaatactattattaatccaaagaagcatcaacaatagaaatgcaacagagaacaaaaaggaataaataa |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3362023 |
tcacgaatttatctaatactattattaatccaaagaagcatcaacaatagaaatgcaacagagaacaaaaaggaataaataa |
3362104 |
T |
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