View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14151_low_33 (Length: 318)

Name: NF14151_low_33

Description: NF14151

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF14151_low_33

[»] chr2 (1 HSPs)

Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 239; E-Value: 1e-132

Query Start/End: Original strand, 7 - 306

Target Start/End: Original strand, 16906523 - 16906822

Alignment:

Q	7	ctcatctacattattattgatattggtttaagatgttaaaaaactcgatcnnnnnnnatcagaactggacatttagtgatttaactcaaatggtaaataa	106	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	16906523	ctcatctaaattattattgatattggtttaagatgttaaaaaactcgatctttttttatcagaactggacatttagtgatttaactcaagtggtaaataa	16906622	T

Q	107	gctcttatgatgaatcatttaagatgatccaagttcaaattatgaatagaacagttatttgatattaaatgactgaaataaagttgtaaatgaaccccta	206	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16906623	gctcttacgatgaatcatttaagaggatccaagttcaaattatgaatagaacaattatttgacattaaatgactgaaataaagttgtaaatgaaccccta	16906722	T

Q	207	agataaatcatttgagataatccatgttcgaattctgaatagaataattctttgtcagattttatttaccttcaaatacaattttggataccatatttct	306	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	16906723	cgataaatcatttgagataatccatgttcgaattctggatagaataattctttgttagattttatttaccttcaaataaaattttggataccatatttct	16906822	T

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