View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_36 (Length: 297)
Name: NF14151_low_36
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_36 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 2723066 - 2722778
Alignment:
| Q |
8 |
atctccaaaaatataatgaaatgtctttcctgatttactatattgcaatcaaataaaatcagaaaataaatataagataaacaaaaagtcaggacacata |
107 |
Q |
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| T |
2723066 |
atctccaaatatataatgaaatgtctttcctaatttactatattgcaatcaaataaaatcaaaaaataaatataagataaacaaaaagtcaggacacata |
2722967 |
T |
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| Q |
108 |
agagatatttacataacaaaaatttatgaaaatttatattatttagagattgttaacctaaatcgacttannnnnnnaaaatcttttaataagttataac |
207 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
2722966 |
agagatatttacataacaaaaatttatgaaaaattatattatttagagattgttaacctaaatcgactta-ttttttaaagtcttttaataagttataac |
2722868 |
T |
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| Q |
208 |
taaaaaattgttatcctatacattttgctaaaatacttcttctaaaaaataaataggtgtaagttctttagtcttacgtttctaagtaac |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
2722867 |
taaaaaattgttatcctatacattttgctaaaatacttcttctaaaaaataaataggtgtaagttctttagtcttatgtttgtaagtaac |
2722778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 21519803 - 21519840
Alignment:
| Q |
231 |
tttgctaaaatacttcttctaaaaaataaataggtgta |
268 |
Q |
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| T |
21519803 |
tttgctaaaatacttcttctaaaaaataagtgggtgta |
21519840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 26211424 - 26211387
Alignment:
| Q |
231 |
tttgctaaaatacttcttctaaaaaataaataggtgta |
268 |
Q |
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| T |
26211424 |
tttgctaaaatacttcttctaaaaaataagtaggtgta |
26211387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Original strand, 2586430 - 2586467
Alignment:
| Q |
231 |
tttgctaaaatacttcttctaaaaaataaataggtgta |
268 |
Q |
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|||||||||||||| |||||||||||||| |||||||| |
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| T |
2586430 |
tttgctaaaatactccttctaaaaaataagtaggtgta |
2586467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 268
Target Start/End: Complemental strand, 27348271 - 27348234
Alignment:
| Q |
231 |
tttgctaaaatacttcttctaaaaaataaataggtgta |
268 |
Q |
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||||||||||||||||||||||||||||| | |||||| |
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| T |
27348271 |
tttgctaaaatacttcttctaaaaaataagttggtgta |
27348234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 43236305 - 43236269
Alignment:
| Q |
232 |
ttgctaaaatacttcttctaaaaaataaataggtgta |
268 |
Q |
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|||||||||||||||||||||||||||| | |||||| |
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| T |
43236305 |
ttgctaaaatacttcttctaaaaaataagtgggtgta |
43236269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 42556479 - 42556443
Alignment:
| Q |
232 |
ttgctaaaatacttcttctaaaaaataaataggtgta |
268 |
Q |
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||||||||||||| |||||||||||||| |||||||| |
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| T |
42556479 |
ttgctaaaatactccttctaaaaaataagtaggtgta |
42556443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 26158379 - 26158343
Alignment:
| Q |
232 |
ttgctaaaatacttcttctaaaaaataaataggtgta |
268 |
Q |
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||||||||||||| |||||||||||||| |||||||| |
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| T |
26158379 |
ttgctaaaatactccttctaaaaaataagtaggtgta |
26158343 |
T |
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