View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14151_low_37 (Length: 296)

Name: NF14151_low_37
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14151_low_37
NF14151_low_37
[»] scaffold0005 (2 HSPs)
scaffold0005 (21-172)||(19450-19601)
scaffold0005 (177-280)||(19120-19223)
[»] chr4 (2 HSPs)
chr4 (21-172)||(14820111-14820262)
chr4 (177-280)||(14820489-14820592)
[»] chr2 (4 HSPs)
chr2 (21-133)||(32146017-32146129)
chr2 (25-150)||(21332970-21333095)
chr2 (25-150)||(1087-1212)
chr2 (181-282)||(32146411-32146513)
[»] chr7 (1 HSPs)
chr7 (177-260)||(15559659-15559742)
[»] chr6 (1 HSPs)
chr6 (181-260)||(15593246-15593325)
[»] chr1 (2 HSPs)
chr1 (66-121)||(12058516-12058571)
chr1 (181-260)||(12058856-12058935)


Alignment Details
Target: scaffold0005 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 19601 - 19450
Alignment:
Q  21 atccggatatgaagttctgaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatg 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19601 atccgaatatgaagttctgaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatg 19502  T
Q  121 caataatgtatgtttaagatatacatataattagggagaaacatggaaggac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19501 caataatgtatgtttaagatatacatataattagggagaaacatggaaggac 19450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 177 - 280
Target Start/End: Complemental strand, 19223 - 19120
Alignment:
Q  177 gccgtaagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaacttcctaaaatgtgttgac 276  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  19223 gccgtaagcgagtaaactcgcttaaagcgtgtatactccagagccaactcgccatgagcgagtttggggcgagttgcacaacttcctaaaatgtgttgac 19124  T
Q  277 tcgt 280  Q
    ||||    
T  19123 tcgt 19120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 14820111 - 14820262
Alignment:
Q  21 atccggatatgaagttctgaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatg 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820111 atccgaatatgaagttctgaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatg 14820210  T
Q  121 caataatgtatgtttaagatatacatataattagggagaaacatggaaggac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820211 caataatgtatgtttaagatatacatataattagggagaaacatggaaggac 14820262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 177 - 280
Target Start/End: Original strand, 14820489 - 14820592
Alignment:
Q  177 gccgtaagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaacttcctaaaatgtgttgac 276  Q
    |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  14820489 gccgtaagcgagtaaactcgcttaaagcgtgtatactccagagccaactcgccatgagcgagtttggggcgagttgcacaacttcctaaaatgtgttgac 14820588  T
Q  277 tcgt 280  Q
    ||||    
T  14820589 tcgt 14820592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 32146017 - 32146129
Alignment:
Q  21 atccggatatgaagttctgaagattcaagttcagtacttttg-aaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttat 119  Q
    |||||||||||||| ||||||||||||||||||||| | ||| |||  ||| | | |||||| |||||||||| |||| |||||||||||||||||||||    
T  32146017 atccggatatgaagctctgaagattcaagttcagtattcttggaaatgagggaga-agatgttgtcatgtgggtcaagaatccttcatgatttatgttat 32146115  T
Q  120 gcaataatgtatgt 133  Q
    ||||||||||||||    
T  32146116 gcaataatgtatgt 32146129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 21332970 - 21333095
Alignment:
Q  25 ggatatgaagttctgaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgcaat 124  Q
    |||||| ||||||||| |||||||||||| | || ||||| ||||  || |||||||||||||||| | ||||||| |  |||||||||||||| ||| |    
T  21332970 ggatataaagttctgaggattcaagttcaatgctcttgaagcaagtgaatgagatgtcgtcatgtgagtcaaggattccacatgatttatgttacgcagt 21333069  T
Q  125 aatgtatgtttaagatatacatataa 150  Q
    ||||| ||| | || |||||||||||    
T  21333070 aatgtctgtctgaggtatacatataa 21333095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 150
Target Start/End: Original strand, 1087 - 1212
Alignment:
Q  25 ggatatgaagttctgaagattcaagttcagtacttttgaaacaaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgcaat 124  Q
    |||||| ||||| ||| |||||||||||| | || ||||| ||||  || |||||||||||||||| | ||| ||| |  |||||||||||||||||| |    
T  1087 ggatataaagttttgaggattcaagttcaatgctcttgaagcaagtgaatgagatgtcgtcatgtgagtcaacgattccacatgatttatgttatgcagt 1186  T
Q  125 aatgtatgtttaagatatacatataa 150  Q
    ||||| ||| | || |||||||||||    
T  1187 aatgtctgtctgaggtatacatataa 1212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 282
Target Start/End: Original strand, 32146411 - 32146513
Alignment:
Q  181 taagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaacttcct-aaaatgtgttgactcg 279  Q
    |||||||||| ||||  |||| || || | ||| || ||||||||||||||  ||| |||| ||| |||||||||||||| || ||||||||||||||||    
T  32146411 taagcgagtatactcatttaaggcgtgcaaacttcagagccaactcgccataggcgggcttggggtgagttgcacaactttctaaaaatgtgttgactcg 32146510  T
Q  280 tcc 282  Q
    |||    
T  32146511 tcc 32146513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 177 - 260
Target Start/End: Original strand, 15559659 - 15559742
Alignment:
Q  177 gccgtaagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaactt 260  Q
    ||||||||||||||||||| ||||| || || | |||||| |||||||| |||||  |||||||| |||||||| |||||||||    
T  15559659 gccgtaagcgagtaaactcacttaaggcgtgcaaactccagagccaactagccattggcgagcttggggcgagtcgcacaactt 15559742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 15593246 - 15593325
Alignment:
Q  181 taagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaactt 260  Q
    ||||| |||||||||||||||||| |||| |||||| ||||||||| |||| ||||||| | |||| |||| ||||||||    
T  15593246 taagcaagtaaactcgcttaaagcgtgtaaactccaaagccaactcaccataagcgagcctggggcaagtttcacaactt 15593325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 12058516 - 12058571
Alignment:
Q  66 caaggaaaagagatgtcgtcatgtgggacaaggatccttcatgatttatgttatgc 121  Q
    ||||| || ||||||||| |||||||  |||||||||| |||||||||||||||||    
T  12058516 caagggaacgagatgtcgccatgtggatcaaggatcctacatgatttatgttatgc 12058571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 260
Target Start/End: Original strand, 12058856 - 12058935
Alignment:
Q  181 taagcgagtaaactcgcttaaagcatgtatactccatagccaactcgccatgagcgagcttcgggcgagttgcacaactt 260  Q
    ||||||||||||||| ||||| || || | |||||| ||||||||||||||  | |||||| ||||||||  ||||||||    
T  12058856 taagcgagtaaactcacttaaggcgtgcaaactccagagccaactcgccattggggagcttggggcgagtcacacaactt 12058935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University