View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_4 (Length: 591)
Name: NF14151_low_4
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 574
Target Start/End: Original strand, 11050343 - 11050895
Alignment:
| Q |
15 |
atgaaggtggctttgaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaaggaattgatggaatcggaccatggaa |
114 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||| ||||| |
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| T |
11050343 |
atgaaggtggctttaaaagtgaaccaatcagaaaataggtttgtgagtggcgcagaattgggtgagagagttaaggagttgatggaat-------tggaa |
11050435 |
T |
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| Q |
115 |
aggatattaaagagaggatgcttcttggaatagtttatcaccaaattcccctttccttcttcgttgaaaattagaaatagatctttagagggaataaaat |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
11050436 |
ag-atattaaagagaggatgcttcttggaatagtttatcatcaaatttcactttccttcttcgttgaaaattaaaaatagatctttagagggaataaaat |
11050534 |
T |
|
| Q |
215 |
tcgaaaagtgtgtccatgccaat-nnnnnnnttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaat |
313 |
Q |
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| T |
11050535 |
tcgaaaagtgtgtccatgccaataaaaaaaattataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaat |
11050634 |
T |
|
| Q |
314 |
gatgttcatgtatc--atatgccgtatcnnnnnnnggaattattttctgatnnnnnnnntatgtgtggctgctctttgcttcatgacataatagtatgtc |
411 |
Q |
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|||||||||||||| ||||| |||||| |||||||||||| ||| |||||||||||||||||||| |||| ||||||||||||||| |
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| T |
11050635 |
gatgttcatgtatcatatatgtcgtatctttttttggaattattttccgat-aaaaaaatatgtgtggctgctctttgcgtcatcacataatagtatgtc |
11050733 |
T |
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| Q |
412 |
tttcataagctaatatgtcaattttaatttttaaccaccttataatcaatagattttgatgcaagagatgctatannnnnnnnatcaataaagcacaact |
511 |
Q |
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| T |
11050734 |
tgtcataagctaatatgtcaattttaatttttaaccaccttataatcaatagattttgatgcaagagatgctatattttttttatcaataaagcacaact |
11050833 |
T |
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| Q |
512 |
ataataaaacaaattagtataagacataacgatacttatgtcatattattagcaaaggtttct |
574 |
Q |
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| T |
11050834 |
ataataaaacaaattagtataagacataacgagacttatgtcata-tattaccaaaggtttct |
11050895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 132 - 467
Target Start/End: Original strand, 11019438 - 11019773
Alignment:
| Q |
132 |
atgcttcttggaatagtttatcaccaaattcccctttccttcttcgttgaaaattagaaatagatctttagagggaataaaattcgaaaagtgtgtccat |
231 |
Q |
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| T |
11019438 |
atgcttcttggaatagtttatcaccaaattcccctttccttcttcgttgaaaattaaaaatagatctttagagggaataaaattcgaaaagtgtgtccat |
11019537 |
T |
|
| Q |
232 |
gccaat-nnnnnnnttataaatatgtgtattacattgagatgtgaattaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgtatcata |
330 |
Q |
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| T |
11019538 |
gctaataaaaaaaattataaatatgtgtattatattgagatgtgaatcaaaattagtagtatcttttttatgtcatgaagaatgatgttcatgcatcata |
11019637 |
T |
|
| Q |
331 |
tgccgtatcnnnnnnnggaattattttctgatnnnnnnnntatgtgtggctgctctttgcttcatgacataatagtatgtctttcataagctaatatgtc |
430 |
Q |
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| T |
11019638 |
tgtcgtatcttttttcagaattattatctgat-aaaaaaatatgtgtggctgctctttgctttatgacataatagtatgtctgtgataagctaatatgtc |
11019736 |
T |
|
| Q |
431 |
aattttaatttttaaccaccttataatcaatagattt |
467 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
11019737 |
aattttaatttttaaccaccttataatcaatagattt |
11019773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 15 - 133
Target Start/End: Original strand, 11019227 - 11019345
Alignment:
| Q |
15 |
atgaaggtggctttgaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaaggaattgatggaatcggaccatggaa |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
11019227 |
atgaaggtggctttgaaagtgaaccaatcagaaaataggtttgtgagtggcacagagttgggtgagagagttaaggagttgatggaatcggaccgtggaa |
11019326 |
T |
|
| Q |
115 |
aggatattaaagagaggat |
133 |
Q |
| |
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||||||||||||||||||| |
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| T |
11019327 |
aggatattaaagagaggat |
11019345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 11002883 - 11002934
Alignment:
| Q |
52 |
ggtttgtgagtggcacagagttgggtgagagagttaaggaattgatggaatc |
103 |
Q |
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||||||||||||| | |||||||| |||||||||||||| ||||||||||| |
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| T |
11002883 |
ggtttgtgagtggaaatgagttgggggagagagttaaggagttgatggaatc |
11002934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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