View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_40 (Length: 250)
Name: NF14151_low_40
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 52174799 - 52175034
Alignment:
| Q |
1 |
tagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaaatgttagtgccctcaaggt |
100 |
Q |
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| T |
52174799 |
tagaaatgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaaatgttaatgccctcaaggt |
52174898 |
T |
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| Q |
101 |
ggcggaggtggttgattctgtcaagaacctatcttggaaattgtttttaggaaaaacagtgggtctaccttgtcttttctatgaaaagttttatcaccct |
200 |
Q |
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| T |
52174899 |
ggcggaggtggttgattctgtcaagaacctatcttggaaattgtttttaagaaaaacagtgggtctaccttgtcttttctatgaaaagttttatcaccct |
52174998 |
T |
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| Q |
201 |
ctagattgtatgttaagatagattcgttgatttgtt |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
52174999 |
ctagattgtatgttaagatagattcgttgatttgtt |
52175034 |
T |
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Back To:
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 81
Target Start/End: Complemental strand, 31618004 - 31617930
Alignment:
| Q |
7 |
tgtcagacatgtcttcatccaatttggatgagacgaattccattacaatgtcaaaataatcgttctttctataaa |
81 |
Q |
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| T |
31618004 |
tgtcagatatgtcttcatccgatttgtacgagacaaattcagttacagtatcaaaataattgttatttctataaa |
31617930 |
T |
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