View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_47 (Length: 222)
Name: NF14151_low_47
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_47 |
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| [»] scaffold0204 (2 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 20150 - 19929
Alignment:
| Q |
1 |
ttgcaaattgtatgtgttacactaaatgaatggtgtaattattcagtttctagcattaggtcacaaagtcatggtgctggtaagcatgattggaatttac |
100 |
Q |
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| T |
20150 |
ttgcaaattgtatgtgttacactaaatgaatggtgtaattattcagtttctagcattaggtcacaaagtcatggtgctggtaagcatgattggaatttac |
20051 |
T |
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| Q |
101 |
atttaacaatgattttccatgcctggcatacaatcatttgtattccaccactgatgagtaagggtcgtcgccccaatctatctactgttgcaatagaaat |
200 |
Q |
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| T |
20050 |
atttaacaatgattttccatacctggcatacaatcatttgtattccaccactgatgagtaagggtcgtcgccccaatctatctactgttgcaatagaaat |
19951 |
T |
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| Q |
201 |
gaatgttgatccggcaagaact |
222 |
Q |
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|||||||||||| ||||||||| |
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| T |
19950 |
gaatgttgatccagcaagaact |
19929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0204; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 122 - 210
Target Start/End: Complemental strand, 7814 - 7726
Alignment:
| Q |
122 |
cctggcatacaatcatttgtattccaccactgatgagtaagggtcgtcgccccaatctatctactgttgcaatagaaatgaatgttgat |
210 |
Q |
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| T |
7814 |
cctggcatataatcatttgtattccaccactgatgagtagaggccttctccccaatctatctacgattgcaatagaaatgaatgttgat |
7726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 48332628 - 48332407
Alignment:
| Q |
1 |
ttgcaaattgtatgtgttacactaaatgaatggtgtaattattcagtttctagcattaggtcacaaagtcatggtgctggtaagcatgattggaatttac |
100 |
Q |
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| T |
48332628 |
ttgcaaattgtatgtgttacactaaatgaatggtgtaattattcagtttctagcattaggtcacaaagtcatggtgctggtaagcatgattggaatttac |
48332529 |
T |
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| Q |
101 |
atttaacaatgattttccatgcctggcatacaatcatttgtattccaccactgatgagtaagggtcgtcgccccaatctatctactgttgcaatagaaat |
200 |
Q |
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| T |
48332528 |
atttaacaatgattttccatacctggcatacaatcatttgtattccaccactgatgagtaagggtcgtcgccccaatctatctactgttgcaatagaaat |
48332429 |
T |
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| Q |
201 |
gaatgttgatccggcaagaact |
222 |
Q |
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| T |
48332428 |
gaatgttgatccagcaagaact |
48332407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 48344626 - 48344425
Alignment:
| Q |
22 |
ctaaatgaatggtgtaattattcagtttctagcattaggtcacaaagtcatggtgctggtaagcatgattggaatttacatttaacaatga-ttttccat |
120 |
Q |
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|||||||||||||| |||||||||| ||||||||||| |||| ||||| | ||| || || ||||| |||||||||| || | || |||| |||||||| |
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| T |
48344626 |
ctaaatgaatggtgcaattattcagcttctagcattatgtcaaaaagttacggttcttgtgagcataattggaatttgcactaaatcatgagttttccat |
48344527 |
T |
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| Q |
121 |
gcctggcatacaatcatttgtattccaccactgatgagtaagggtcgtcgccccaatctatctactgttgcaatagaaatgaatgttgatccggcaagaa |
220 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48344526 |
acctggcatataatcatttgtattccaccactgatgagtaagggccgtcgccccaatctatctactgttgcaatagaaatgaatgttgataaggcaagaa |
48344427 |
T |
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| Q |
221 |
ct |
222 |
Q |
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|| |
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| T |
48344426 |
ct |
48344425 |
T |
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