View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_48 (Length: 220)
Name: NF14151_low_48
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_48 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 171; Significance: 5e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40431761 - 40431524
Alignment:
| Q |
1 |
catgaaataactctttttccacgataattaaatgacaacggtagtactaagcactatcaaatgcatatgaatatgaaagca------------------t |
82 |
Q |
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| T |
40431761 |
catgaaataactctttttccacgataattaaatgacaacggtagtactaagaactatcaaatgcatatgaatatgaaagcaatcaatggttagaaagcat |
40431662 |
T |
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| Q |
83 |
aaaaatgcaaaacatcttcgaagctacaagtgcttccatgtttgatgaaagcatctcgaactcgatcgtcttcacattatcgaacaaggacagccaagct |
182 |
Q |
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| T |
40431661 |
aaaaatgcaaaacatcttcgaagctacaagtgcttccatgtttgatgaaagcatctcgaactcgatcgtcttcacattatcgaacaagaacagccaagct |
40431562 |
T |
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| Q |
183 |
tgttccctgttgaggaaaagaaaaatgcaaatatgaaa |
220 |
Q |
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| T |
40431561 |
tgttccctgttgaggaaaagaaaaatgcaaatatgaaa |
40431524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 40428180 - 40428119
Alignment:
| Q |
10 |
actctttttccacgataattaaatgacaacggtagtac-taagcactatcaaatgcatatga |
70 |
Q |
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| T |
40428180 |
actctttttccacgacacttaaattacaacagtagtacttacgcactttcaaatgcatatga |
40428119 |
T |
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