View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_5 (Length: 571)
Name: NF14151_low_5
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 256 - 553
Target Start/End: Complemental strand, 36401261 - 36400964
Alignment:
| Q |
256 |
ccattcattctaatggggatttgtaataaatcttattttatcattattttctttctaaaaacatagttttgacaggaacttcacaatagttaaaattacc |
355 |
Q |
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| T |
36401261 |
ccattcattctaatggggatttgtaataaatcttattttatcattattttctttctaaaaacatagttttgacaggaacttcacaatagttaaaattacc |
36401162 |
T |
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| Q |
356 |
aaaattttaagaatggaacaaaaagaaaagaaattcagaacaatacaaatatattgatgtggatgtaactgtaactgatatgacattaatgccataagat |
455 |
Q |
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| T |
36401161 |
aaaattttaagaatggaacaaaaagaaaagaaattcagaacaatacaaatatattgatgtcgatgtaactgtaactgatatgacattaatgccataagat |
36401062 |
T |
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| Q |
456 |
gagatgcaaaagactaatgctaaccctattaggtgcatattgggtcaagaaattgatgactccatttatgagagatggacaaagatgagattggtggg |
553 |
Q |
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| T |
36401061 |
gagatgcaaaagactaatgctaaccctattaggtgcatattgggtcaagaaattgatgactccatttatgagagatggacaaagatgagattggtggg |
36400964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 36401516 - 36401311
Alignment:
| Q |
1 |
tgagaccgtaactaataaactattaaaatcacaatggaattcctcaaatgatattgtacttaaggtcaatacgccgcaattgccagacaatcctcgtaac |
100 |
Q |
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| T |
36401516 |
tgagaccgtaactaataaactattcaaatcacaatggatttcctccaatgatattgtacttaaggtcaatacgccgcaattgccagacaatcctcgtaac |
36401417 |
T |
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| Q |
101 |
agaaaagtgagccagaggttgtcatttccaatataccagccactagggaggctgagattcactcagagccacttttgcgtaacttgactagaaagaaaca |
200 |
Q |
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| T |
36401416 |
agaaaagtgagccagaggttgtcatttccaatataccagccaccaaggaggttgagtttctctcagagccacttttgtttaacttgactagaaagaaaca |
36401317 |
T |
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| Q |
201 |
ttcttc |
206 |
Q |
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| T |
36401316 |
ttcttc |
36401311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 36394919 - 36394763
Alignment:
| Q |
21 |
tattaaaatcacaatggaattcctcaaatgatattgtacttaaggtcaatacgccgcaattgccagacaatcctcgtaacagaaaagtgagccagaggtt |
120 |
Q |
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||||||||||||| |||| ||| || |||||||||||||| ||||||||||| | ||| |||| | ||| || |||||||||||| ||||| ||| |||| |
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| T |
36394919 |
tattaaaatcacattggatttcgtccaatgatattgtactcaaggtcaatacactgcagttgcaacacattcatcgtaacagaaatgtgaggcagcggtt |
36394820 |
T |
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| Q |
121 |
gtcatttccaatataccagccactagggaggctgagattcactcagagccacttttg |
177 |
Q |
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| T |
36394819 |
gccatgtccaacataccaaccaccaaggaggttgagtttatctcaaaaccacttttg |
36394763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 36377790 - 36377617
Alignment:
| Q |
1 |
tgagaccgtaactaataaactattaaaatcacaatggaattcctcaaatgatattgtacttaaggtcaata--cgccgcaattgccagacaatcctcgta |
98 |
Q |
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||||||| ||||||||||| |||||||| |||| |||| ||||| ||||||||||||||||||||||||| | || || |||| | ||||| ||||| |
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| T |
36377790 |
tgagaccataactaataaattattaaaagcacattggatttcctacaatgatattgtacttaaggtcaatatacaccacagttgcaacgcaatcatcgta |
36377691 |
T |
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| Q |
99 |
acagaaaagtgagccagaggttgtcatttccaatataccagccactagggaggctgagattcactcagagccac |
172 |
Q |
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||||||| |||||||| ||||||||||| || |||||| || | ||||| || | ||| ||||||||||| |
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| T |
36377690 |
acagaaatgtgagccaacagttgtcatttctgatggaccagcgaccaaggaggttgggtttctctcagagccac |
36377617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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