View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14151_low_52 (Length: 214)
Name: NF14151_low_52
Description: NF14151
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14151_low_52 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 34925211 - 34925409
Alignment:
| Q |
1 |
ccaagtgtctaacactcacaacttcatgataaaactaaacatagtttaattttagttacagcatttagaatgatttatgtaagcgcctactcctataaat |
100 |
Q |
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| T |
34925211 |
ccaagtgtctaacactcacaacttcatgataaaactaaacatagtttaattttagttacagcatttagaatgatttatgtaagcacctactcctataaat |
34925310 |
T |
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| Q |
101 |
attctttataggaagtctaacatataaattttggatgtccttcatcttaagcctccaacacttacttcttctgccgcttacttttgatgttaccatcag |
199 |
Q |
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| T |
34925311 |
attctttataagaagtctaacatataaattttggatgtccttcatcttaagcctccaacacttgcttcttctgccgcttacttttgatgttaccttcag |
34925409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 34935116 - 34935311
Alignment:
| Q |
1 |
ccaagtgtctaacactcacaacttcatgataaaactaaacatagtttaattttagttacagcatttagaatgatttatgtaagcgcctactcctataaat |
100 |
Q |
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|||||||||||| ||| |||||| | ||||||||||| ||||||||||||||| |||||||| |||||||||||| ||||| ||||||||||||||| |
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| T |
34935116 |
ccaagtgtctaatgctcgcaactttaggataaaactaa---tagtttaattttagtcacagcattgagaatgatttatttaagcacctactcctataaat |
34935212 |
T |
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| Q |
101 |
attctttataggaagtctaacatataaattttggatgtccttcatcttaagcctccaacacttacttcttctgccgcttacttttgatgttaccatcag |
199 |
Q |
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| T |
34935213 |
attctatataagaagtctaacatatagattttggatgtccttcatcttaagcctccaacacttacttcttctgccgcttacttttgatgttaccttcag |
34935311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 34929576 - 34929771
Alignment:
| Q |
1 |
ccaagtgtctaacactcacaacttcatgataaaactaaacatagtttaattttagttacagcatttagaatgatttatgtaagcgcctactcctataaat |
100 |
Q |
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|||||||||||| ||| |||||| | ||||||||||| ||||||||||||||| |||| ||| |||||||||||| ||||| ||||||||||||||| |
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| T |
34929576 |
ccaagtgtctaatgctcgcaactttaggataaaactaa---tagtttaattttagtcacagaattgagaatgatttatttaagcacctactcctataaat |
34929672 |
T |
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| Q |
101 |
attctttataggaagtctaacatataaattttggatgtccttcatcttaagcctccaacacttacttcttctgccgcttacttttgatgttaccatcag |
199 |
Q |
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||||| |||| |||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
34929673 |
attctatataagaagtcaaacatatagattttggatgtccttcatcttaagcctccagcacttacttcttctgccgcttacttttgatgttaccttcag |
34929771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 136 - 189
Target Start/End: Original strand, 34928592 - 34928645
Alignment:
| Q |
136 |
tgtccttcatcttaagcctccaacacttacttcttctgccgcttacttttgatg |
189 |
Q |
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| T |
34928592 |
tgtccttcatcttaagcctccaacacgtgcttcttctgccgcttacttctgatg |
34928645 |
T |
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